View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_low_3 (Length: 465)
Name: NF16178_low_3
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 1437638 - 1438075
Alignment:
| Q |
17 |
agaaagtaagtggttattttaattgtttcataaatgtttctatctgttaaattttgtgaaaattcacctattttgatatactaggttgccctttagcttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1437638 |
agaaagtaagtggttattttaattgtttcataaatgtttctatctgttaaattttgtgaaaattcacctattttgatatactaggttgccttttagcttt |
1437737 |
T |
|
| Q |
117 |
ttaatgttactgatcatatgttgtgtttgtttggttccacaatgggaacttcagaacttgagtttgcaacagccagannnnnnnnnnnnnnnnnnnnnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1437738 |
ttaatgttactgatcatatgttgtgtttgtttggttccacaatgggaacttcagaacttgagtttgcaacagccagatttttttacgtttaatttttatt |
1437837 |
T |
|
| Q |
217 |
nngggaatcagttttgagcttaagaaactatttgcagctttcacattttaacaccttgcaacttttggtaattgtacactcaaaatcaattttgaatgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1437838 |
ttgggaatcagttttgagcttaagaaactatttgcagctttcacattttaacaccttgcaacttttggtaattgtacactcaaaatcaattttgaatgat |
1437937 |
T |
|
| Q |
317 |
ctaagatatccaaacaaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaacacaaaccac |
416 |
Q |
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| T |
1437938 |
ctaagatatccaaacaaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaacaaaaaccac |
1438037 |
T |
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| Q |
417 |
tttacatttaaatattctgtatctgctaatattcttgg |
454 |
Q |
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| T |
1438038 |
tttacatttaaatattctgtatctgctaatatttttgg |
1438075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 227 - 406
Target Start/End: Original strand, 1444805 - 1444983
Alignment:
| Q |
227 |
gttttgagcttaagaaactatttgcagctttcacattttaacaccttgcaacttttggtaattgtacactcaaaatcaattttgaatgatctaagatatc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
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| T |
1444805 |
gttttgagcttaagaaactatttgcagctttcacattttatcactttgcaacttttggtaattatacacacaaaatcaattttgaatgatctaaactatc |
1444904 |
T |
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| Q |
327 |
caaacaaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaa |
406 |
Q |
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| T |
1444905 |
caaacaaaatgaattcgcaaaaatcacttttgcgcatccaaa-cacaaaccacttttcatttaactcacttttaactaaa |
1444983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 1444624 - 1444793
Alignment:
| Q |
18 |
gaaagtaagtggttattttaattgtttcataaatgtttctatctgttaaattttgtgaaaattcacctattttgatatactaggttgccctttagctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
1444624 |
gaaagtaagtggttattttaattgtttcataaatgtttctatctgttaaattg-gtgaaaattcacctattttgatatgctaggttgtcctttagctttt |
1444722 |
T |
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| Q |
118 |
taatgttact--gatcatatgttgtgtttgtttggttccacaatgggaacttcagaacttgagtttgcaac |
186 |
Q |
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|| |||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1444723 |
tagtgttgctctgatcatatgttatgtttgtttggttccacaatgggaacttcagaacatgagtttgcaac |
1444793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 1450775 - 1450938
Alignment:
| Q |
17 |
agaaagtaagtggttattttaattgtttcataaatgtttctatctgttaaattttgtgaaaattcacctatt--ttgatatactaggttgccctttagct |
114 |
Q |
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|||||||||||||||||||||||||| | |||| |||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
1450775 |
agaaagtaagtggttattttaattgtatgataattgttattatctgtcaaataa-gtgaaaattcacctattatttgatatactaggttgcccttcagct |
1450873 |
T |
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| Q |
115 |
ttttaatgttactgatcatatgttgtgtttgtttggttccacaatgggaacttcagaacttgagttt |
181 |
Q |
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|| | ||||| || ||| ||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
1450874 |
ttat--tgttattggtcacatgttatgtttgtttggttccacaatggaaacttccatacttgagttt |
1450938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 38045330 - 38045361
Alignment:
| Q |
375 |
accactttacatttaactcacttttaactaaa |
406 |
Q |
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| T |
38045330 |
accactttacatttaactcacttttaactaaa |
38045361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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