View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_low_4 (Length: 391)
Name: NF16178_low_4
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 2653067 - 2653416
Alignment:
| Q |
1 |
aactcactcattcacttgatgatgaatgatttcttcaaaactccaaagattcattgaagtaattattaacctcccattcacatgattcaaaatcctcctc |
100 |
Q |
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| T |
2653067 |
aactcactcattcacttgatgatgaatgatttcttcaaaactccaaagattcattgaagtaattattaacctcccattcacatgattcaaaatcctcctc |
2653166 |
T |
|
| Q |
101 |
aagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaataacaggttcataataagagcaagaaccatatgattcatca |
200 |
Q |
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| T |
2653167 |
aagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaagaacaggttcataataagaacaagaaccatatgattcatca |
2653266 |
T |
|
| Q |
201 |
acaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653267 |
acaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattctt |
2653366 |
T |
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| Q |
301 |
gagaataagatgaactaccattacaatcctcaacagaaacattatcacca |
350 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2653367 |
gagaataagatgaactaccattacaatcctcaacagacacattatcacca |
2653416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 381
Target Start/End: Original strand, 2653442 - 2653471
Alignment:
| Q |
352 |
attcatctttcactgatcttttcttctgtg |
381 |
Q |
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| T |
2653442 |
attcatctttcactgatcttttcttctgtg |
2653471 |
T |
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