View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_low_5 (Length: 374)
Name: NF16178_low_5
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 21056581 - 21056919
Alignment:
| Q |
17 |
aaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaggcgt |
116 |
Q |
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| T |
21056581 |
aaatgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaagcat |
21056680 |
T |
|
| Q |
117 |
tgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcatttcnnnnnnnattactaaaaggtgatct |
216 |
Q |
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| T |
21056681 |
tgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcgtttctttttttattactaaaaggtgatct |
21056780 |
T |
|
| Q |
217 |
ccagtttcgttgtccagagtccaaacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaacctgtttgtaatt |
316 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056781 |
ccagtttcgttgtccagagtccagacatagctttaattgatttctagaactcaagcttcctttaattgactatttaaattatttgaacctgtttgtaatt |
21056880 |
T |
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| Q |
317 |
attgtaaatgggagaaacatcttgttattatctatagag |
355 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
21056881 |
attttaaatgggagaaacatcttgttattatctatagag |
21056919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 355
Target Start/End: Complemental strand, 26365350 - 26365095
Alignment:
| Q |
94 |
tacatttcttgatatttaggcgttgtttaatttacattaaatcgcttgagaaaaatgcttctcttgcac--ctgtattttgatttactcgacatcatttc |
191 |
Q |
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|||||||||||||||||||| |||| |||||| ||||| ||||| |||||||| |||||||| |||||| ||||||||||||||||| ||| ||||||| |
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| T |
26365350 |
tacatttcttgatatttaggtgttgattaattcacattgaatcgtttgagaaacatgcttct-ttgcacacctgtattttgatttacttgacgtcatttc |
26365252 |
T |
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| Q |
192 |
nnnnnnnattactaaaaggtgatctccagtttcgttgtccagagtccaaacatagctttaattgatt-tctagaactcaagcttcctttaattgactatt |
290 |
Q |
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||||| ||||||||| || ||||| || |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26365251 |
tttttttattacgaaaaggtgacctaaagttt----gt----agtcgagacatagctttaattgattatctagaactcaagcttcctttaattgactatt |
26365160 |
T |
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| Q |
291 |
taaattatttgaacctgtttgtaattattgtaaatgggagaaacatcttgttattatctatagag |
355 |
Q |
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|||| ||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
26365159 |
taaactatttgaacctgtttataattattttaaaagggagaaacatctttttattatctatagag |
26365095 |
T |
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