View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16179_high_1 (Length: 1092)
Name: NF16179_high_1
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 660; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 18 - 822
Target Start/End: Original strand, 3810133 - 3810919
Alignment:
| Q |
18 |
cagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810133 |
cagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcc |
3810232 |
T |
|
| Q |
118 |
cttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810233 |
cttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtc |
3810332 |
T |
|
| Q |
218 |
gagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
317 |
Q |
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| T |
3810333 |
gagcagcaagtgaagatgggtttgac-------------------ctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
3810413 |
T |
|
| Q |
318 |
gtctttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcatttgatgaatattcatgtgtacaatccgataaaaaa |
417 |
Q |
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| T |
3810414 |
gtatttacagcagaaagaatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcattcgatgaatattcatgtgtacaatccgataaaaaa |
3810513 |
T |
|
| Q |
418 |
ttttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaag |
517 |
Q |
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| T |
3810514 |
atttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaag |
3810613 |
T |
|
| Q |
518 |
atgggatacctactcaattaagttgtgattctgagctgattcaagaagtcacagattatcttcaaagttttaatgcatcattagcatgattacaatgaga |
617 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810614 |
atgggatacctactcaattaagttgtgattctgaactgattcaagaagtcacatattatcttcaaagttttaatgcatcattagcatgattacaatgaga |
3810713 |
T |
|
| Q |
618 |
atgcaatgcaagtgttttgtgcttgctttgttcacc-nnnnnnnnncctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgtt |
716 |
Q |
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| T |
3810714 |
atgcaatgcaagtgttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgtt |
3810813 |
T |
|
| Q |
717 |
cttaggatttaatccttgctactttcattattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgatttatgcgcttcaaga |
816 |
Q |
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| T |
3810814 |
cttaggatttaatccttgctactttcattattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgatttatacgcttcaaga |
3810913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 885 - 1073
Target Start/End: Original strand, 3810982 - 3811170
Alignment:
| Q |
885 |
gaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
984 |
Q |
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| T |
3810982 |
gaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
3811081 |
T |
|
| Q |
985 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
1073 |
Q |
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| T |
3811082 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
3811170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
230 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
317 |
Q |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
211 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
299 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
230 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
317 |
Q |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
211 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
287 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| || ||||| |||||||||||||| |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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