View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16179_high_4 (Length: 402)
Name: NF16179_high_4
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 103 - 385
Target Start/End: Complemental strand, 31613900 - 31613608
Alignment:
| Q |
103 |
ataagaaaaagaatcattcctttgagactcattgttactatgaagaaatacaagagcttctccaccataaattatagaatctcttaaatgatctttctct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
31613900 |
ataagaaaaagaatcattcctttgagactcattgttactatgaagaaatacaagagcttctccaccataaattatatcagctactaaatgatctttctct |
31613801 |
T |
|
| Q |
203 |
atagaatcttcataacaataactttcttgaat---------ttcttcttcttcttcagatgaaacatattcataatgttgatcactacaaaaaacgaata |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31613800 |
atagaatcttcataacaataactttcttgaatttcttcttcttcttcttcttcttcagatgaaacatattcatattgttgatcactacaaaaaacgaata |
31613701 |
T |
|
| Q |
294 |
tagaaactttattgcaaatataatgatggaaacattaagaatg-nnnnnnnnnctagaggggtgtaagcagtaataataataacctttggaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31613700 |
tagaaactttattgcaaatataatgatggaaacattaagaatgaaaaaagaaactagaggggtgtaagcagtaataataataacctttggaat |
31613608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31614017 - 31613945
Alignment:
| Q |
1 |
atacaaattttcagttgaaaaattttctactgaagaaaactcttcaatgaagctatcttgaggagtgataaac |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31614017 |
atacaaattttcagttgaaaaattttcttctgaagaaaactcttcaatgaagctatcttgaggagtgataaac |
31613945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University