View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16179_high_9 (Length: 257)
Name: NF16179_high_9
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 47421474 - 47421232
Alignment:
| Q |
1 |
tataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggtggcaactttaacccttttt-ggggacaatcactggttcattatcat |
99 |
Q |
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| T |
47421474 |
tataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggttgcaactttaacccttttttggggacaatcactggttcattatcat |
47421375 |
T |
|
| Q |
100 |
ctctcagaccacaggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatgcaggtat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421374 |
ctctcagaccacaggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatgcaggtat |
47421275 |
T |
|
| Q |
200 |
tcactgatttacgttatatttgtgctcttgctatcatatttgt |
242 |
Q |
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| T |
47421274 |
tcactgatttacgttatatttgagctcttgctatcatatttgt |
47421232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47407769 - 47407657
Alignment:
| Q |
1 |
tataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggtggcaactttaa-ccctttttggggacaatcactggttcattatcat |
99 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
47407769 |
tataatcagcaacaacaacatatacattttccatcgccatatgaaatcagtggtggcaactttaatccttttttggggaaaatcactggttcattatcat |
47407670 |
T |
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| Q |
100 |
ctctcagaccaca |
112 |
Q |
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|||| |||||||| |
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| T |
47407669 |
ctctaagaccaca |
47407657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 47419014 - 47418903
Alignment:
| Q |
2 |
ataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggtggcaactttaaccctttttg-gggacaatcactggttcattatcatc |
100 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||| | |||||| || ||||||||| |||| | || ||||| |||||||| ||||||||||||||||| |
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| T |
47419014 |
ataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacagccatttttccgggacaataactggttcattatcatc |
47418915 |
T |
|
| Q |
101 |
tctcagaccaca |
112 |
Q |
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|||||||||||| |
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| T |
47418914 |
tctcagaccaca |
47418903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 47390654 - 47390543
Alignment:
| Q |
2 |
ataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggtggcaactttaacccttttt-ggggacaatcactggttcattatcatc |
100 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||| | |||||| | ||||||||| |||| | || ||||| ||||||| |||| |||||| |||||| |
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| T |
47390654 |
ataagcagcaacaacagcatatacatttcccatcgacatatggaggcagtggtggtaactacagccatttttccgggacaaccactagttcatcatcatc |
47390555 |
T |
|
| Q |
101 |
tctcagaccaca |
112 |
Q |
| |
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| |||||||||| |
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| T |
47390554 |
tttcagaccaca |
47390543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 47391953 - 47391890
Alignment:
| Q |
136 |
cattgaatagagacacaggcggaaatgcttcaaattctcagcttcctgattcagatgcaggtat |
199 |
Q |
| |
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|||||||| |||||| |||||| ||||||| |||||||| ||| ||||||| ||||||||||| |
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| T |
47391953 |
cattgaatcgagacattggcggagatgcttctaattctcacctttctgattctgatgcaggtat |
47391890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 47422241 - 47422179
Alignment:
| Q |
112 |
aggatgtggaaatgttccaagatccattgaatagagacacaggcggaaatgcttcaaattctc |
174 |
Q |
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||||||||||||||||||||| |||||||||| ||| | || |||| ||||||| ||||||| |
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| T |
47422241 |
aggatgtggaaatgttccaagctccattgaatcaagaaatagtcggagatgcttctaattctc |
47422179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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