View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16179_low_2 (Length: 497)
Name: NF16179_low_2
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 11025730 - 11025259
Alignment:
| Q |
18 |
gtttgaatccaccacaaatgctattggtattgctattgcaaccaaaaaacctattggtgttcgcaccccccaagctcgtgtttggtcgatgtgcaaaaaa |
117 |
Q |
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| T |
11025730 |
gtttgaatccaccacaaatgctattggtattgctattgcaaccaaaaaacctattcgtgttcgcaccccccaagctcgtgtttggtcgatgtgcaaaaaa |
11025631 |
T |
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| Q |
118 |
ttagaagacccatcgagggcaggtatatgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgaga |
217 |
Q |
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| T |
11025630 |
ttagaagacccatcgagggcaggtatatgtttcaaaacaatattaccgaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgaga |
11025531 |
T |
|
| Q |
218 |
ctcaagcagcaagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaacgcagacgtaagtggatcacttgattg |
317 |
Q |
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| T |
11025530 |
ctcaagcagcaagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaacgcagacgtaagtggatcacttgattg |
11025431 |
T |
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| Q |
318 |
ttgcaagcaacaatatgaaatgatgcccgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctcaagaagtaaatgcccaatttagcgcg |
417 |
Q |
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| T |
11025430 |
ttgcaagcaacaatatgaaatgatgcctgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctcaagaagtaaatgctcaatttagcggg |
11025331 |
T |
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| Q |
418 |
attctttcataccatacctcttgtgtagatacttttgctgagagtactgattatcctgttgcaccctttgct |
489 |
Q |
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| T |
11025330 |
attctttcataccatacctcttgtgtagatacttttgctgagagtaatgattatcctgttgcaccctttgct |
11025259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 10891432 - 10891535
Alignment:
| Q |
145 |
tgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgagactcaagcagcaagtgtacaaatcaata |
244 |
Q |
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|||| ||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| | ||||| || |||||||| |
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| T |
10891432 |
tgttacaatacaatattaccaaaagcagagagcgctcctaaattcaacatatacacagcccttgaggttgagactcaagaaacaagtataagaatcaata |
10891531 |
T |
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| Q |
245 |
aaac |
248 |
Q |
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|||| |
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| T |
10891532 |
aaac |
10891535 |
T |
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