View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16179_low_5 (Length: 361)

Name: NF16179_low_5
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16179_low_5
NF16179_low_5
[»] chr3 (12 HSPs)
chr3 (18-238)||(2506623-2506843)
chr3 (274-356)||(2506505-2506587)
chr3 (143-238)||(797217-797312)
chr3 (288-355)||(797360-797427)
chr3 (143-230)||(9507753-9507840)
chr3 (143-230)||(9515728-9515815)
chr3 (274-350)||(3400382-3400458)
chr3 (274-357)||(669117-669200)
chr3 (161-220)||(3400506-3400565)
chr3 (143-220)||(3259469-3259546)
chr3 (182-238)||(669026-669082)
chr3 (298-357)||(3259342-3259401)
[»] chr6 (1 HSPs)
chr6 (280-357)||(18715187-18715264)
[»] chr8 (3 HSPs)
chr8 (143-238)||(24061436-24061531)
chr8 (143-237)||(22931200-22931297)
chr8 (28-82)||(22931361-22931415)
[»] scaffold0149 (3 HSPs)
scaffold0149 (143-236)||(25949-26041)
scaffold0149 (28-88)||(25846-25906)
scaffold0149 (288-357)||(26091-26160)
[»] scaffold0888 (1 HSPs)
scaffold0888 (162-238)||(2933-3009)
[»] scaffold2125 (1 HSPs)
scaffold2125 (143-196)||(629-682)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2506843 - 2506623
Alignment:
Q  18 atctatgtgttactgattctgattgtccaccacatatgtgccccccgggtatggaaccgaggtgtgtgcgtcgaatgtgtaaatgccttccgatagggtg 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506843 atctatgtgttactgattctcattgtccaccacatatgtgcccccccggtatggaaccgaggtgtgtgcgtcgaatgtgtaaatgccttccgatagggtg 2506744  T
Q  118 gagaaaatactttgtgccatgaattttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506743 gagaaaatactttgtgccatgaattttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattt 2506644  T
Q  218 tcttgtcacccaataaattga 238  Q
    |||||||||||||||||||||    
T  2506643 tcttgtcacccaataaattga 2506623  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 2506587 - 2506505
Alignment:
Q  274 agttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506587 agttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctc 2506505  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 797217 - 797312
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaattga 238  Q
    |||||||||||| ||| |||||| | ||||||||||||||||||||| ||| || ||  |||||||| |||| ||||||| || ||||||||||||    
T  797217 ttcatttagtgtcagagccaagagagtacacaaatactctgctacaacatttcacaaggtgtcatttcgttaatttcttgccaaccaataaattga 797312  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 797360 - 797427
Alignment:
Q  288 actctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctct 355  Q
    ||||||||||||||| |||||||||||| |||||||||||  ||||| |||| |||||||||||||||    
T  797360 actctaaaataatgacaatgaaatgaaataagacagcaacaaatattatttagattatcttcttctct 797427  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 9507840 - 9507753
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaa 230  Q
    |||||||||| | |||||||| |||  |||||||| |||||||| ||| ||||| || |||||||||||||||||||||| |||||||    
T  9507840 ttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcatttagttattttcttgccacccaa 9507753  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 9515815 - 9515728
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaa 230  Q
    |||||||||| | |||||||| |||  |||||||| |||||||| ||| ||||| || |||||||||||||||||||||| |||||||    
T  9515815 ttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcatttagttattttcttgccacccaa 9515728  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 3400458 - 3400382
Alignment:
Q  274 agttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttct 350  Q
    ||||| ||||| | ||| |||||||||||||||||||||||| |||||||||||  ||||| |||| ||||||||||    
T  3400458 agttatatatttgaactataaaataatgataatgaaatgaaataagacagcaacaaatattatttaaattatcttct 3400382  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 669117 - 669200
Alignment:
Q  274 agttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctct 357  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||||| ||||  ||||| | || ||||| |||| ||||||    
T  669117 agttatatatttgcactctaaaataatgataatgaaatgaaataagacaacaacaaatattatctagattatattctcctctct 669200  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 3400565 - 3400506
Alignment:
Q  161 caagataatacacaaatactctgctacaatattccataaactgtcatttagttattttct 220  Q
    ||||||| ||||||||| ||||||||| ||||||||| | ||||||||||||||||||||    
T  3400565 caagatagtacacaaatgctctgctacgatattccattagctgtcatttagttattttct 3400506  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 3259546 - 3259469
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttct 220  Q
    |||||||| ||  ||||||||||||||||||||||  ||| |||||||||||||    ||||||||||||||||||||    
T  3259546 ttcatttattgccagacccaagataatacacaaatgatctactacaatattccacgggctgtcatttagttattttct 3259469  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 669026 - 669082
Alignment:
Q  182 tgctacaatattccataaactgtcatttagttattttcttgtcacccaataaattga 238  Q
    ||||| ||||||||| ||  |||| |||||||||||||||| |||||||||||||||    
T  669026 tgctataatattccaaaagttgtcttttagttattttcttgccacccaataaattga 669082  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 3259401 - 3259342
Alignment:
Q  298 aatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctct 357  Q
    |||||||||||| | ||| |||||||||||  |||||||||| ||| |||||||||||||    
T  3259401 aatgataatgaacttaaataagacagcaacaaatattgtttatattgtcttcttctctct 3259342  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 18715187 - 18715264
Alignment:
Q  280 atattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctct 357  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||| |||| ||||| |||||||||||    
T  18715187 atatttgcactctaaaataatgataatgaaatgaaataagacagcagcacatattatttagattatattcttctctct 18715264  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 24061436 - 24061531
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaattga 238  Q
    ||||||| |||| |||||||||| | | |||| || ||||||||||||||| || || | |||||||||||||||||||| || ||||||||||||    
T  24061436 ttcatttggtgtcagacccaagagagtccacatatgctctgctacaatattgcacaagccgtcatttagttattttcttgccaaccaataaattga 24061531  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 22931297 - 22931200
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcattt---agttattttcttgtcacccaataaattg 237  Q
    |||||||||| ||||||||| ||||  |||||||| |||||||||||| ||||| || |||||||||     ||||||||||| ||||||| ||||||    
T  22931297 ttcatttagttttagacccacgatagcacacaaatgctctgctacaatgttccacaagctgtcatttttattttattttcttgccacccaacaaattg 22931200  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 22931415 - 22931361
Alignment:
Q  28 tactgattctgattgtccaccacatatgtgccccccgggtatggaaccgaggtgt 82  Q
    |||||||||||||||||||| | |||||||| |||| | ||||||||||||||||    
T  22931415 tactgattctgattgtccacaaaatatgtgcacccctgatatggaaccgaggtgt 22931361  T

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Target: scaffold0149 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 25949 - 26041
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaatt 236  Q
    |||||||||||| |||||||||| | |||| |||| ||||||||||| ||| || || ||||||||||||||||||| || || ||||||||||    
T  25949 ttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttcatgccaaccaataaatt 26041  T

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Target: scaffold0149; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 25846 - 25906
Alignment:
Q  28 tactgattctgattgtccaccacatatgtgccccccgggtatggaaccgaggtgtgtgcgt 88  Q
    |||||||||||||||||||||| ||||||||||||| || |||||||| | ||||||||||    
T  25846 tactgattctgattgtccaccaaatatgtgcccccctggaatggaaccaaagtgtgtgcgt 25906  T

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Target: scaffold0149; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 26091 - 26160
Alignment:
Q  288 actctaaaataatgataatgaaatgaaacaagacagcaacggatattgtttacattatcttcttctctct 357  Q
    |||||||||||||||||||||||||||| ||||| ||||   ||||| |||| | ||||||||| |||||    
T  26091 actctaaaataatgataatgaaatgaaataagacggcaataaatattatttagactatcttcttttctct 26160  T

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Target: scaffold0888 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 2933 - 3009
Alignment:
Q  162 aagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaattga 238  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||||  |||||||||||||| | |||| ||||||||||    
T  2933 aagatagtacacaaatgctctgctgcaatattccataagctgttgtttagttattttctcgccaccaaataaattga 3009  T

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Target: scaffold2125 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 629 - 682
Alignment:
Q  143 ttcatttagtgttagacccaagataatacacaaatactctgctacaatattcca 196  Q
    ||||||| ||| ||||||||||||  |||||||||| ||| |||||||||||||    
T  629 ttcatttggtgctagacccaagattgtacacaaataatcttctacaatattcca 682  T

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