View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16179_low_6 (Length: 341)
Name: NF16179_low_6
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 49424919 - 49424598
Alignment:
| Q |
1 |
actcatccttaatagtttgtcccaaatctaaataaaaaggattgatgcacacgtgattctaaacttaactaaaattgcctttaccaacccctnnnnnnnn |
100 |
Q |
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| T |
49424919 |
actcatccttaatagtttgtcccaaatctaaataaaaaggattgatgcacacgtgattctaaacttaactaaaattgcctttaccaacccctaaaaaaaa |
49424820 |
T |
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| Q |
101 |
ntgcatttaccaaatacgaaatgcagtttttagaatggaattgatttttcttaactaatttttacaaaaatgcaactccattatttagcgaaaactaaag |
200 |
Q |
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| T |
49424819 |
-tgcatttaccaaatacgaaatgcagtttttagaatggaattgatttttcttaactaatttttacaaaaatgcaactccattatttagcgaaaactaaag |
49424721 |
T |
|
| Q |
201 |
ctattggaaagggaaaagnnnnnnnnncaaatcgaattataagaccgtgctaatgaaaataatgtataaattactttatctgcagttcgttgaatcgaac |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49424720 |
ctattggaaagggaaaagaaaaaaaaacaaatcgaattataagactgtactaatgaaaataatgtataaattactttatctgcagttcgttgaatcgaac |
49424621 |
T |
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| Q |
301 |
aatttctgaattcaagcatatga |
323 |
Q |
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||||||| ||||||||||||||| |
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| T |
49424620 |
aatttctaaattcaagcatatga |
49424598 |
T |
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