View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16179_low_8 (Length: 298)
Name: NF16179_low_8
Description: NF16179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16179_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16645601 - 16645781
Alignment:
| Q |
1 |
tacgtgtctcttcctgtatttcttgtcggaggtgaaaaatcattcatgcaagcaaccaattgatatcaaaaagtggataagagagtgactcatactgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16645601 |
tacgtgtctcttcctgtatttcttgtcggaggtgaaaaatcattcatgcaagcaaccaattgatatcaaaaagtggataagagagtgactcatactgatt |
16645700 |
T |
|
| Q |
101 |
cttgagggtcttaatatgtctatgtgacaatatcttccaaaactagaaaatacttaattgatcataacaagttggacattt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16645701 |
cttgagggtcttaatatgtctatgtgacaatatcttccaaaactagaaaatacttaattgatcataacaagttggacattt |
16645781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University