View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1617_low_1 (Length: 690)

Name: NF1617_low_1
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1617_low_1
NF1617_low_1
[»] chr1 (1 HSPs)
chr1 (21-680)||(19456929-19457588)
[»] scaffold0268 (1 HSPs)
scaffold0268 (21-670)||(22418-23067)
[»] chr7 (1 HSPs)
chr7 (21-670)||(10197021-10197670)
[»] chr8 (1 HSPs)
chr8 (21-625)||(25025558-25026162)
[»] chr4 (1 HSPs)
chr4 (318-358)||(5971477-5971517)


Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 21 - 680
Target Start/End: Original strand, 19456929 - 19457588
Alignment:
Q  21 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19456929 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatc 19457028  T
Q  121 tttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct 220  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457029 tttcctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct 19457128  T
Q  221 tgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatg 320  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457129 tgaaaatctcgccggtagatttatgaaagaaatccaagtctctgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatg 19457228  T
Q  321 tattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgatt 420  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||       |||||||    
T  19457229 tattctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgatt 19457328  T
Q  421 gggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgat 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19457329 gggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgat 19457428  T
Q  521 tttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgtta 620  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  19457429 tttctggttgaaaaagcgcggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgacgaaggattgcactgtgatttcgcttgtttgtta 19457528  T
Q  621 tactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtctgtgctgct 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  19457529 tactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgtttgtgatgct 19457588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 21 - 670
Target Start/End: Original strand, 22418 - 23067
Alignment:
Q  21 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22418 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc 22517  T
Q  121 tttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct 220  Q
    ||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || |||||    
T  22518 tttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtcct 22617  T
Q  221 tgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatg 320  Q
    ||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  22618 tgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatg 22717  T
Q  321 tattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgatt 420  Q
    || || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||       |||||||    
T  22718 tactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgatt 22817  T
Q  421 gggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgat 520  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||    
T  22818 gggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgat 22917  T
Q  521 tttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgtta 620  Q
    ||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || |||||  | ||||||||||| ||||||||||||    
T  22918 tttctggttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgtta 23017  T
Q  621 tactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt 670  Q
    ||||||||||||| |||||| |||| ||||||||| ||||| ||||||||    
T  23018 tactcacttctacaaaagaaactaacttcagagcgtgtgaaggaaattgt 23067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 21 - 670
Target Start/End: Complemental strand, 10197670 - 10197021
Alignment:
Q  21 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10197670 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc 10197571  T
Q  121 tttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct 220  Q
    ||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || |||||    
T  10197570 tttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtcct 10197471  T
Q  221 tgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatg 320  Q
    ||||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  10197470 tgaaaatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatg 10197371  T
Q  321 tattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgatt 420  Q
    || || |||||| | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||       |||||||    
T  10197370 tactcccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgatt 10197271  T
Q  421 gggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgat 520  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||    
T  10197270 gggcaatgaaatggattgattcaagcgattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgat 10197171  T
Q  521 tttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgtta 620  Q
    ||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || |||||  | ||||||||||| ||||||||||||    
T  10197170 tttctggttgaaaaagcgcggtttaatgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgtta 10197071  T
Q  621 tactcacttctacgaaagaagctaagttcagagcgcgtgaaagaaattgt 670  Q
    ||||||||||||| |||||| |||| ||||||||| ||||| ||||||||    
T  10197070 tactcacttctactaaagaaactaacttcagagcgtgtgaaggaaattgt 10197021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 625
Target Start/End: Complemental strand, 25026162 - 25025558
Alignment:
Q  21 aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatc 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25026162 aacccagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatc 25026063  T
Q  121 tttcctccgatctcaagcactggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct 220  Q
    |||||||||||||  | |||||| | |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  25026062 tttcctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcct 25025963  T
Q  221 tgaaaatctcgccggtagatttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatg 320  Q
     |||||||||||||| ||||| ||||||||| | ||| |||| ||||| ||||| |||||||| || || || || ||||||||||||||||| ||||||    
T  25025962 cgaaaatctcgccggaagattcatgaaagaagttcaaatctctgaagcgcgtgctttctacgggtttcaaatcgctattgaaaacatccactcagagatg 25025863  T
Q  321 tattctcttctcctcgaaacgtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgatt 420  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||       |||||||    
T  25025862 tattctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgatt 25025763  T
Q  421 gggcgatgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgat 520  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||    
T  25025762 gggctttgaaatggatcgattcaagcgattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctccggaagcttctgtgcgat 25025663  T
Q  521 tttttggttgaaaaagcgtggtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgtta 620  Q
    ||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  25025662 tttctggttgaaaaaacgcggtttaatgccgggattaactttctcaaacgagcttatttcacgcgacgaaggcttacactgtgattttgcttgtttgtta 25025563  T
Q  621 tactc 625  Q
    |||||    
T  25025562 tactc 25025558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 5971477 - 5971517
Alignment:
Q  318 atgtattctcttctcctcgaaacgtatataagtgattctgc 358  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  5971477 atgtattctcttctcctcgaaatgtatataagtgattctgc 5971517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University