View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1617_low_10 (Length: 300)

Name: NF1617_low_10
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1617_low_10
NF1617_low_10
[»] chr1 (1 HSPs)
chr1 (12-300)||(8446564-8446852)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 8446852 - 8446564
Alignment:
Q  12 atctacccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttcttcgtcaagaaacaatgtgtcaaggtggtggacgga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446852 atcttcccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttcttcgtcaagaaacaatgtgtcaaggtggtggacgga 8446753  T
Q  112 aatatccacacgtgagtcgtggaaaagggtcatcgatttgtacccaaaaccttgattcattaatcacattcacacatttggaacattggtagctctttga 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446752 aatatccacacgtgagtcgtggaaaaaggtcatcgatttgtacccaaaaccttgattcattaatcacattcacacatttggaacattggtagctctttga 8446653  T
Q  212 tattctagaccaaacagtccagccatgtccctaatgcttgaatgcgagattttttcagaccggagcaagtcccatttccttttaccccc 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446652 tattctagaccaaacagtccaaccatgtccctaatgcttgaatgcgagattttttcagaccggagcaagtcccatttccttttaccccc 8446564  T

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