View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_12 (Length: 257)
Name: NF1617_low_12
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_12 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 114751 - 114526
Alignment:
| Q |
14 |
agaactacacaacgatctaatgatcacaagaagaatcataatcacgaagattggaatcccagaaatagttaccaacatttggaaactccatattgaagtt |
113 |
Q |
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| T |
114751 |
agaactacacaacgatctaatgatcccaagaagaatcataatcacgaagattggaatccgagaaatagttaccaacatttggaaactccgtattgaagtt |
114652 |
T |
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| Q |
114 |
gatatcttcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaagggg |
213 |
Q |
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| T |
114651 |
gatatcttcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaagggg |
114552 |
T |
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| Q |
214 |
acattactaggttgtgaagtagaagc |
239 |
Q |
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| T |
114551 |
acattactaggttgtgaagtagaagc |
114526 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 33821255 - 33821389
Alignment:
| Q |
86 |
caacatttggaaactccatattgaagttgatatcttcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaatt |
185 |
Q |
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| T |
33821255 |
caacatttggaacctccatattaaagttgttctcttcttgtaacgaagagcatgagccaattttgtcaatgtttacttgttcccccaagttccataaact |
33821354 |
T |
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| Q |
186 |
gtccgaccacattgcacacggtaaggggacattac |
220 |
Q |
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| T |
33821355 |
gtccgaccacattccacatggtacgggaacattac |
33821389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 33733813 - 33733900
Alignment:
| Q |
121 |
tcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggta |
208 |
Q |
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| T |
33733813 |
tcttgtattgaagagcctgagccaatttgctcactgcctacttgttcacccaagtcccataaattgtccgacgacaatgcacacggta |
33733900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 33762371 - 33762458
Alignment:
| Q |
121 |
tcttgtaatgaagagtatgagcaaattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggta |
208 |
Q |
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| T |
33762371 |
tcttgtaatgaagagcatgagccaattttctcactgtctactggctcccccaagttccacaaattatcggtcaacattgcacatggta |
33762458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 5471597 - 5471535
Alignment:
| Q |
158 |
ctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacattac |
220 |
Q |
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| T |
5471597 |
ctacttgctcccccaagttccataaactttctgaccacattgtacaaggtattgggacattac |
5471535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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