View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_2 (Length: 452)
Name: NF1617_low_2
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 5974750 - 5974341
Alignment:
| Q |
18 |
aaacaccgatctttatcctacgtatagccacacgatataatattgagaaatgatatatttgtaaaattatgattaatagaaattatgattgggcctaata |
117 |
Q |
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| T |
5974750 |
aaacaccgacctttatcctacgtatagcaacacgatataatattgagaaatgatatatttgtaaaattatgactaatataaattatgattgggcctaata |
5974651 |
T |
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| Q |
118 |
taactccacaaaattggcttgtataagtatgactaaatggcgagtagtccgacagcagaaacctgatagcatgtgatccaatagatgttaagaaggctct |
217 |
Q |
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| T |
5974650 |
taactccacaaaatcggcttgtataagtatgactaaagggtgagtagtcctacagcagaaatctgatagtatgtggtccaatagatgttaaggaggctct |
5974551 |
T |
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| Q |
218 |
gatacataaccccacaaaatcaacttatgaggtgagaactgcccctactattaaacacatgatcaaaccannnnnnngtccgatatgaaactcattaaca |
317 |
Q |
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| T |
5974550 |
gatacataaccccacaaaatcaacttatgaggtgagaactgcccccactattaaacacatgttcaaacca-ttttttgtccgatatgaaactcattaaca |
5974452 |
T |
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| Q |
318 |
gtttagtaggaacatatttgtgctaagaatggatattttaaacaaaatatatatgcaacttaaggtaaaacagttgactaacatccaataaaaatttatt |
417 |
Q |
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| T |
5974451 |
gtttagtaggaacatatttgtgctaagaatggatattttaaacaaaatatatatgcaacttaaggtaaaacagttgactaacatccaataaaaatttatt |
5974352 |
T |
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| Q |
418 |
atttttgtacc |
428 |
Q |
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| T |
5974351 |
atttttgtacc |
5974341 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 38668207 - 38668162
Alignment:
| Q |
94 |
tagaaattatgattgggcctaatataactccacaaaattggcttgt |
139 |
Q |
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| T |
38668207 |
tagaaattgtgattgggcctaacacaaccccacaaaattggcttgt |
38668162 |
T |
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