View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_4 (Length: 397)
Name: NF1617_low_4
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_4 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 66 - 387
Target Start/End: Original strand, 16455834 - 16456154
Alignment:
| Q |
66 |
actgttggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
165 |
Q |
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| T |
16455834 |
actgttggagatgtatataaaatgtg-aataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
16455932 |
T |
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| Q |
166 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
265 |
Q |
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| T |
16455933 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
16456032 |
T |
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| Q |
266 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
365 |
Q |
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| T |
16456033 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
16456132 |
T |
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| Q |
366 |
ttttcctcttttcctagtataa |
387 |
Q |
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| T |
16456133 |
ttttcctcttttcctagtataa |
16456154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 71 - 383
Target Start/End: Original strand, 620831 - 621150
Alignment:
| Q |
71 |
tggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaattacaaga |
170 |
Q |
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| T |
620831 |
tggagatgtatatgaaattgtgaataaaacagtaacaattttaatgtaaaaatggtgaaa--gcttgtaattgtatcaatggtgatgaacaattacaaga |
620928 |
T |
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| Q |
171 |
gaaataagga--------gtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaat |
262 |
Q |
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| T |
620929 |
gaaataagggacaaaagcgtaacaaactgatagtgagatactatcaatccctcatagcacgcagtgctcccaaatcactaacaaagagaccccacagaat |
621028 |
T |
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| Q |
263 |
aacagaatacttagctacc-tattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattcct |
361 |
Q |
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| T |
621029 |
aacagaatacttagctaccttattctctgacttactattacttatatagttaacaaaactcatgcatcacatgcaccgaaactgacacctcatcattcct |
621128 |
T |
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| Q |
362 |
tcccttttcctcttttcctagt |
383 |
Q |
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| T |
621129 |
ttccttttcctcttttcctagt |
621150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 114763 - 114830
Alignment:
| Q |
1 |
caacacaagaaggtcttttattattaatatctacttttcaataaaacttaatttaatgtgttgtaact |
68 |
Q |
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| T |
114763 |
caacacaagaaggtcttttattattaatatttacttttcaataaaacttaatttaatgtgttgtaact |
114830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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