View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_5 (Length: 373)
Name: NF1617_low_5
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 9794957 - 9795292
Alignment:
| Q |
25 |
aagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctct |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794957 |
aagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctct |
9795056 |
T |
|
| Q |
125 |
tgaataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgt |
224 |
Q |
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||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9795057 |
tgaataattctccaagattccttcacattcctctccaaagaccaaccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgt |
9795156 |
T |
|
| Q |
225 |
gatgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatactt |
324 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9795157 |
gatgccaaactacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatactt |
9795256 |
T |
|
| Q |
325 |
atccaaattcttgaaaatacccaatgcttcgtcttc |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9795257 |
atccaaattcttgaaaatacccaatgcttcgtcttc |
9795292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 360
Target Start/End: Complemental strand, 45146078 - 45145743
Alignment:
| Q |
25 |
aagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctct |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45146078 |
aagtccggaaggattatttctgagatttctttcacaaaggcacctaaggaatgtattatagcaaactatatctggggttaccccatttgtcttcatctct |
45145979 |
T |
|
| Q |
125 |
tgaataattctcctagattcctttacattcctctccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgt |
224 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45145978 |
tgaataattctcctagattccttcacattcctctccatagaccaaccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgt |
45145879 |
T |
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| Q |
225 |
gatgccaagctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatactt |
324 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145878 |
gatgccaatctacaccttcagctctcttagcatgccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatactt |
45145779 |
T |
|
| Q |
325 |
atccaaattcttgaaaatacccaatgcttcgtcttc |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45145778 |
atccaaattcttgaaaatacccaatgcttcgtcttc |
45145743 |
T |
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