View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1617_low_6 (Length: 372)
Name: NF1617_low_6
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 33503668 - 33503322
Alignment:
| Q |
1 |
agaaaagaagttaactgcaaaaaccactcaagaacaggatgatatccctcttttttattcagacatcatgcccctccttgtaagaacattttcttcttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33503668 |
agaaaagaagttaactgcaaaaaccactcaagaacaggatgatatccctcttttttattcagacatcatgcccctccttgtaagaacattttcttcttca |
33503569 |
T |
|
| Q |
101 |
ttttttaaattttgaaaccaagccagattgatacaggtacattgaaattgaatatttatgattttaggtccaaagtgtaactggttacttactcttactt |
200 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33503568 |
tttttaaaaatttgaaaccaagccagattgatacaagtacattgaa------tatttatgattttaggtccaaagtgtaactggttacttactcttactt |
33503475 |
T |
|
| Q |
201 |
tgtacaacttgctttctaatcatattgcataaattatctcaccaggttactaatgagccaactgttggagaggatgcatttgtatggttgggatcattag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33503474 |
tgtacaacttgctttctaatcatattgcataaattatctcaccaggttactaatgagccaactgttggagaggatgcatttgtatggttgggatcattag |
33503375 |
T |
|
| Q |
301 |
ttccattagtagcagatgttgcgaatggaaggttcacttttgaatctttaaca |
353 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33503374 |
ttccattagtagcagatgtagcgaatggaaggttcacttttgaatctttaaca |
33503322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University