View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_8 (Length: 331)
Name: NF1617_low_8
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 4537920 - 4538158
Alignment:
| Q |
11 |
aatatctctttatttttcagtataaatcttgtatccacagttctatcttgttcaatagcaaccaattcctacctcctgcaaatactaacacgagaaagat |
110 |
Q |
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| T |
4537920 |
aatatctctttatttttcagtataaatcttgtatccacagttctatctagttcaatagcaaccaattcctaactcctgcaaatactaacacgagaaagat |
4538019 |
T |
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| Q |
111 |
ttgttaggtaaagtggggtgacatttgtaagtccaaaagggagggtgacttgggggtgagggatatatgatacgtgaatattagtctcttggttaaatgg |
210 |
Q |
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| T |
4538020 |
ttgttaggtaaagtggggtgatatatgcaagtccaaaa-ggagggtgacttgacggtgagggatatatgaaaggtgaatatgattctcttagttaaatcg |
4538118 |
T |
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| Q |
211 |
aagtggaagttgttatttcttgacctggaagggtggaaag |
250 |
Q |
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| T |
4538119 |
aagtggaggctgttatttcatgatacggaagggtggaaag |
4538158 |
T |
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