View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1617_low_9 (Length: 306)
Name: NF1617_low_9
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1617_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 10543908 - 10544198
Alignment:
| Q |
1 |
cctgatatatatacttgtataaagtcagaaagcttattcatgctaattggatagacacaaggagtaaaaagaagatggccatatttggcgagtgcttatc |
100 |
Q |
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| T |
10543908 |
cctgatatatatacttgtataaagtcagaaagcttattcatgctaattggatagacacaaggagtaaaaagaagatggccatatttggcgagtgcttatc |
10544007 |
T |
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| Q |
101 |
aatttgtatggttgtgaccaattcacacataatataattacgcataagaaacagatctaaatctaattttagatattgattagttactttaactaatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10544008 |
catttgtatggttgtgaccaattcacacataatataattacgcataagaaacagatctaaatctaattttagatactgattagttactttaactaatcta |
10544107 |
T |
|
| Q |
201 |
tgttcctatataataaatcgtttgctaagtttacaataacaaagacaccttgaggggtctgttgatctttggaacaagggaagaaaagggt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10544108 |
tgttcctatataataaatcgtttgctaagtttacaataacaaagacaccttgaggggtctgttgatctttggaacaagggaagaaaagggt |
10544198 |
T |
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