View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16180_high_5 (Length: 294)

Name: NF16180_high_5
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16180_high_5
NF16180_high_5
[»] chr5 (9 HSPs)
chr5 (18-289)||(3299755-3300026)
chr5 (18-289)||(3392648-3392919)
chr5 (18-255)||(1163333-1163573)
chr5 (59-160)||(1850192-1850293)
chr5 (115-255)||(40418614-40418758)
chr5 (115-255)||(38988036-38988180)
chr5 (115-255)||(39880151-39880297)
chr5 (115-255)||(39726755-39726906)
chr5 (18-74)||(40418517-40418573)
[»] chr4 (2 HSPs)
chr4 (111-255)||(44444395-44444543)
chr4 (115-210)||(25911951-25912046)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3299755 - 3300026
Alignment:
Q  18 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299755 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaaga 3299854  T
Q  118 cctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299855 cctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaac 3299954  T
Q  218 aaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299955 aaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact 3300026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3392648 - 3392919
Alignment:
Q  18 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392648 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaaga 3392747  T
Q  118 cctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392748 cctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaac 3392847  T
Q  218 aaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392848 aaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact 3392919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 1163573 - 1163333
Alignment:
Q  18 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaaga 117  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||||||   |||    
T  1163573 acaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttataga 1163474  T
Q  118 cctttttatccattggaggatttgcttgatggatgat---ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaa 214  Q
    ||||||| |||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1163473 cctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacaaa 1163374  T
Q  215 aacaaggaagatgcttttcatttattagcttttttctattt 255  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  1163373 aacaaggaagatgcttttcatttattagcttttttatattt 1163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 1850192 - 1850293
Alignment:
Q  59 accgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccac 158  Q
    ||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctac 1850291  T
Q  159 tt 160  Q
    ||    
T  1850292 tt 1850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 40418614 - 40418758
Alignment:
Q  115 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac--c 212  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || ||||||||||  ||||||||||  |    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaac 40418713  T
Q  213 aaaa--caaggaagatgcttttcatttattagcttttttctattt 255  Q
    ||||  |||||||||||||||||||||||||| || |||||||||    
T  40418714 aaaaatcaaggaagatgcttttcatttattaggttctttctattt 40418758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
Q  115 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 213  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  |||||||||| |     
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac 38988135  T
Q  214 ---aaacaaggaagatgcttttcatttattagcttttttctattt 255  Q
       || |||||||| |||| |||||||||||| || |||||||||    
T  38988136 aacaatcaaggaagctgctcttcatttattaggttctttctattt 38988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 39880151 - 39880297
Alignment:
Q  115 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 213  Q
    |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| ||  |||||||||  |     
T  39880151 agacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataac 39880249  T
Q  214 ------aaacaaggaagatgcttttcatttattagcttttttctattt 255  Q
          || |||||||||||||||||||||||||| || |||||||||    
T  39880250 aacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39880297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 39726755 - 39726906
Alignment:
Q  115 agacctttttatccattggaggatttgcttgatggatgatccac----ttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 210  Q
    ||||||||| ||||||||||||| |||||||| |||||||| |     |||| |||||||||||| ||||| | | |||||||||||||  |||||||||    
T  39726755 agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa 39726854  T
Q  211 ccaaaacaa-------ggaagatgcttttcatttattagcttttttctattt 255  Q
      | |||||       ||||||||||||||||||||||| || |||||||||    
T  39726855 taacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39726906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 40418517 - 40418573
Alignment:
Q  18 acaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaa 74  Q
    ||||||||||||||||||||||||| ||  |||||||  ||||||| ||| ||||||    
T  40418517 acaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaa 40418573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
Q  111 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 210  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  211 ccaaaa----caaggaagatgcttttcatttattagcttttttctattt 255  Q
    | ||||    ||||||| |||| ||||||||||||| || |||||||||    
T  44444443 cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt 44444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  115 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 210  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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