View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_1 (Length: 1225)
Name: NF16180_low_1
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_1 |
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| [»] scaffold1550 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 823
Target Start/End: Complemental strand, 10417818 - 10417036
Alignment:
| Q |
18 |
atatgtacagatggatccattttgtcaccttaaaattagatttttgtctctcaactaaccagactccatgaacccatcgcatttcttatcctacttattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
10417818 |
atatgtacagatggatccattttgtcaccttaaaattagatttttgtctctcaactaaccagactccataaacacatcgcatttcttatcctacttattt |
10417719 |
T |
|
| Q |
118 |
tgttttccaattaatgctattaacttatgagggacaaagcaccacnnnnnnnnnnnnngttcaactgatgaattaatgaatttgtgataagaaaaaggat |
217 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10417718 |
tgttttccaattaatgctattaacttatgagtgacaaagcaccacaaaaagcaaaaaagttcaactgatgaattaatgaatttgtgataagaaaaaggat |
10417619 |
T |
|
| Q |
218 |
tttgtacgnnnnnnnnnnnnnnnnnnnnnnngggtaagtggtcagtgggtggagaggacataattgcttccttcactcttnnnnnnnncttttgcttttg |
317 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10417618 |
tttgtacaaaaattaaaaaagataaagaaaagggtaagtggtcagtgggtggagaggacataattgcttccttcactcttaaaaaaa-cttttgcttttg |
10417520 |
T |
|
| Q |
318 |
agtgtgaacagaagaaaattcattttgttgatacatctgaaaagaacaaaaggttacatcagaattacttacaaaaagatattggttatcagagataaaa |
417 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10417519 |
agtctgaacagaagaaaattcat--------------------gaacaaaaggttacatcagaattacttacaaaaagatattggtcatcagagataaaa |
10417440 |
T |
|
| Q |
418 |
ggttccaatcggtatgaaagcattcatcaatcatgaaggtggaggtacgaattcatttacttaaagcaatcaattgataaaagtgtttttgttaaacaat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10417439 |
ggttccaatcggtatgaaagcattcatcaatcatgaaggtggaagtacgaattcatttacttaaagcaatcaattgataaaagtgtttttgttaaacaat |
10417340 |
T |
|
| Q |
518 |
caatcagtgcatgagttattataatactatcacaatattgagttgaatttgctttaaataaattactactttggtacgggataaaagtaaaagaaaaggg |
617 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10417339 |
caatcagtgcatgagttattataa---tatcacaatattgagttgaatttgctttaaataaattactactttggtacgtgataaaagtaaaagaaaaggg |
10417243 |
T |
|
| Q |
618 |
ataatgcagatttggtatagcaatttcttttttgacaaattaaagaaattattgctnnnnnnnnnnntcattgaaattatatttaagggtgtacatattt |
717 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
10417242 |
acaatgcagatttgttatagcaatttcttttttgacaaattaaagaaattattgctaaaaaaaaaaatcatagaaattatatttaggggtgtacatattt |
10417143 |
T |
|
| Q |
718 |
ctagtttttattttgttttgaaggatatttctcgttgtttaaatttacggcttaatacattacttggtccattaac-taattctttatttcaaagtggtt |
816 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||| ||||| ||||| ||||||| ||| |||| |
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| T |
10417142 |
atagtttttattttgttttgaaggatatttctcattatttaaatttaaggcttaatacatcacttggtcccttaacttaattttttatttgaaaatggtc |
10417043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 851
Target Start/End: Complemental strand, 16957498 - 16957441
Alignment:
| Q |
794 |
taattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
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||||||||| ||||||| || |||| ||| ||| ||||||||||||||||||| |||| |
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| T |
16957498 |
taattctttttttcaaattgattctctaactattaaacgtttcaatttggtcctttat |
16957441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 781 - 851
Target Start/End: Complemental strand, 9102761 - 9102690
Alignment:
| Q |
781 |
ttggtccattaactaatt-ctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
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||||||| |||||| ||| ||||||||||||||||| || ||| | |||||||||||||||||||| ||||| |
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| T |
9102761 |
ttggtcccttaacttatttctttatttcaaagtggtcctttaactttaaaacgtttcaatttggtcacttat |
9102690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 781 - 851
Target Start/End: Original strand, 9097092 - 9097163
Alignment:
| Q |
781 |
ttggtccattaact-aattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| | ||| |||||||||| | |||||||||| |||| |
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| T |
9097092 |
ttggtcctttaacttaattctttatttcaaagtggtcccctaactataaaacgtctaaatttggtcctttat |
9097163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 851
Target Start/End: Complemental strand, 28931206 - 28931149
Alignment:
| Q |
794 |
taattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
|
||||||||| |||||| |||| |||||| | |||||||| ||||||||||||||||| |
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| T |
28931206 |
taattctttttttcaatatggtcctataactttaaaacgtctcaatttggtcccttat |
28931149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1550 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1550
Description:
Target: scaffold1550; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 794 - 851
Target Start/End: Original strand, 180 - 237
Alignment:
| Q |
794 |
taattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
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||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
180 |
taattctttgtttcaaagtggtctcataactataaaacgtctcaatttggtcccttat |
237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 766 - 853
Target Start/End: Complemental strand, 23082247 - 23082159
Alignment:
| Q |
766 |
ggcttaatacattacttggtccattaact-aattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttatat |
853 |
Q |
| |
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|||||||||||| | || |||| |||| | |||||||| ||||||| |||| | ||| || ||||||||||||||||||||||||||| |
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| T |
23082247 |
ggcttaatacatcatttagtcctttaatttaattctttttttcaaaatggtcccttaactaaaaaacgtttcaatttggtcccttatat |
23082159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 851
Target Start/End: Original strand, 6709692 - 6709749
Alignment:
| Q |
794 |
taattctttatttcaaagtggttctataaatataaaacgtttcaatttggtcccttat |
851 |
Q |
| |
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||||||||| ||| ||| |||| |||||| | |||||||| ||||||||||||||||| |
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| T |
6709692 |
taattcttttttttaaaatggtcctataactctaaaacgtctcaatttggtcccttat |
6709749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1137 - 1168
Target Start/End: Complemental strand, 35789310 - 35789279
Alignment:
| Q |
1137 |
tcaatcttaaataatcaactttataccaaaaa |
1168 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35789310 |
tcaatcttaaataatcaactttataccaaaaa |
35789279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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