View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_10 (Length: 255)
Name: NF16180_low_10
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 2711749 - 2711547
Alignment:
| Q |
47 |
aaggcatggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacata |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2711749 |
aaggcatggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacata |
2711650 |
T |
|
| Q |
147 |
ttggacttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctccttcatc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
2711649 |
ttggacttctctgtgtgcaagaaattgcaaaggagagacctactatggccgcagttgtttcaatgcttaatagtgagattgttaaacttcctcctccatc |
2711550 |
T |
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| Q |
247 |
tca |
249 |
Q |
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||| |
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|
| T |
2711549 |
tca |
2711547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 2704090 - 2703888
Alignment:
| Q |
47 |
aaggcatggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacata |
146 |
Q |
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|||||||||||| |||||| ||||||| | ||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2704090 |
aaggcatggaaactatggaatgaagaggagattatatctttgatagatccagaaatatgtaagcctgattatgtggatcagattttgagatgcatacata |
2703991 |
T |
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| Q |
147 |
ttggacttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctccttcatc |
246 |
Q |
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| T |
2703990 |
ttggacttgtttgtgtgcaagaaattgcaaaggagagacctaccatggccacatttgtttcaatgcttaatagtgagattgttaaacttcctcctccatc |
2703891 |
T |
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| Q |
247 |
tca |
249 |
Q |
| |
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||| |
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| T |
2703890 |
tca |
2703888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 2716701 - 2716503
Alignment:
| Q |
51 |
catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg |
150 |
Q |
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|||||||| |||||| |||||| | ||||| |||||||||||| |||||||||||| |||||| | ||| | | ||||||||||||||||| ||||| |
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| T |
2716701 |
catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg |
2716602 |
T |
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| Q |
151 |
acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctccttcatctca |
249 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
2716601 |
acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctca |
2716503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 2723324 - 2723126
Alignment:
| Q |
51 |
catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg |
150 |
Q |
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|||||||| |||||| |||||| | ||||| |||||||||||| |||||||||||| |||||| | ||| | | ||||||||||||||||| ||||| |
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| T |
2723324 |
catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg |
2723225 |
T |
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| Q |
151 |
acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctccttcatctca |
249 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
2723224 |
acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctca |
2723126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 2745155 - 2744957
Alignment:
| Q |
51 |
catggaaaatatggattgaagagaacattgtatctttgatagatctagaaatatgtaagcctgattgtctggatcagattttgagatgcatacatattgg |
150 |
Q |
| |
|
|||||||| |||||| |||||| | ||||| |||||||||||| |||||||||||| |||||| | ||| | | ||||||||||||||||| ||||| |
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| T |
2745155 |
catggaaactatggaatgaagatgaggttgtagctttgatagatcaagaaatatgtaatgctgattatgtgggtaacattttgagatgcatacacattgg |
2745056 |
T |
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| Q |
151 |
acttctctgtgtgcaagaaattgcaaaggagagacctaatatggccacagttgtttcaatgcttaatagtgagattgttaaactgcctccttcatctca |
249 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
2745055 |
acttctttgtgtgcaagaaattgcaaaggagagacctactatggccacagttgtttcaatgcttaatagtgagattgttaaacttcctcatccatctca |
2744957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36376868 - 36376912
Alignment:
| Q |
132 |
tgagatgcatacatattggacttctctgtgtgcaagaaattgcaa |
176 |
Q |
| |
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|||||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
36376868 |
tgagatgcattcaaattggacttctgtgtgtgcaagaaaatgcaa |
36376912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36401588 - 36401632
Alignment:
| Q |
132 |
tgagatgcatacatattggacttctctgtgtgcaagaaattgcaa |
176 |
Q |
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|||||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
36401588 |
tgagatgcattcaaattggacttctgtgtgtgcaagaaaatgcaa |
36401632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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