View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_12 (Length: 250)
Name: NF16180_low_12
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 30730990 - 30731235
Alignment:
| Q |
1 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactccagt--aggaagtggatttacggatgaaattgaagatgt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30730990 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaagatgt |
30731089 |
T |
|
| Q |
99 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagagtcaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
30731090 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaatttagagtcaat |
30731189 |
T |
|
| Q |
199 |
atagtttcttaattcaacaaagcatagttttctaaaagtttgtcga |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30731190 |
atagtttcttaattcaacaaagcatagttttctaaaagtttttcga |
30731235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14705173 - 14705413
Alignment:
| Q |
1 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactccagt--aggaagtggatttacggatgaaattgaagatgt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14705173 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaagatgt |
14705272 |
T |
|
| Q |
99 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagagtcaat |
198 |
Q |
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| T |
14705273 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaatttagagtcaat |
14705372 |
T |
|
| Q |
199 |
atagtttcttaattcaacaaagcatagttttctaaaagttt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
14705373 |
atagtttcttaattcaacaaagcatagttttctaaaagttt |
14705413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14670830 - 14670588
Alignment:
| Q |
1 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactccagt--aggaagtggatttacggatgaaattgaagatgt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14670830 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaagatgt |
14670731 |
T |
|
| Q |
99 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagagtcaat |
198 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
14670730 |
tgtt---aaccatagcctcctaattcaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaaattagagtcaat |
14670634 |
T |
|
| Q |
199 |
atagtttcttaattcaacaaagcatagttttctaaaagtttgtcga |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14670633 |
atagtttcttaattcaacaaagcatagttttctaaaagtttttcga |
14670588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 14685483 - 14685720
Alignment:
| Q |
1 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactccagt--aggaagtggatttacggatgaaattgaagatgt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||| |||||||||||||||||| |
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| T |
14685483 |
ctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcgctccagtgtatgaagtggatttatggatgaaattgaagatgt |
14685582 |
T |
|
| Q |
99 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattg-nnnnnnntttagagtcaa |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
14685583 |
tgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggttattttagtggtatcataattgtatttattgaaaaaaaaaatagagtcaa |
14685682 |
T |
|
| Q |
198 |
tatagtttcttaattcaacaaagcatagttttctaaaa |
235 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||| |
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| T |
14685683 |
tgtagtttcttaattcaacaaaccatagttttctaaaa |
14685720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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