View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_14 (Length: 219)
Name: NF16180_low_14
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 4041972 - 4041781
Alignment:
| Q |
17 |
tctcatctcattgatattattaactactgcctattggaaaaacaaaaagttaactactgtcatannnnnnnn-gtacaaaacaattaacttattttatca |
115 |
Q |
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| T |
4041972 |
tctcatctcattgatatta---actactgcctattggaaaaacaaaaagttaactactgtcatatttttttttgtacaaaacaattaacttattttatca |
4041876 |
T |
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| Q |
116 |
tcctcaatattgaattattgatatacaagtc-------ccaaaaagtgggcatgtcattttatgattnnnnnnntacatggagctataaattttc |
203 |
Q |
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| T |
4041875 |
tcctcaatattgaattattgatatacaagtcccaatcaccaaaaagtgtgcatgtcattttatgattaaaaaaatacatggagctataaattttc |
4041781 |
T |
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