View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_2 (Length: 491)
Name: NF16180_low_2
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 46 - 473
Target Start/End: Complemental strand, 24463251 - 24462824
Alignment:
| Q |
46 |
tcctcacaaccccaaaaaaccaatccctcttaacccctctcctcaactctcacccttcaacaatccacccattaatcctccctttcccgtctcacccatc |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24463251 |
tcctcacaaccccaaaaaaccaatccctcttaacccctctcctcaactctcacccttcaacaatccaccctttaatcctccctttcccgtctcacccatc |
24463152 |
T |
|
| Q |
146 |
aatccctcgcggcatcgaaaacgccaaagacttaccaaactcattccacaccttcatcctcgctgtctcgaatcttcacgatccacttctcaattggttc |
245 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || || ||||||||||||||| |
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| T |
24463151 |
aatccctcacggcatcgaaaacgcaaaagacttaccaaactccttcgacaccttcatcctcgctgtctcgaagcttcatgacccgcttctcaattggttc |
24463052 |
T |
|
| Q |
246 |
cactctcatcattcacctcctcagtatataatttctgatatgttttgtggttggacacaacacctagcttctcaactcaacattcgtagacttgtttttt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24463051 |
cactctcatcattcacctcctcagtatataatttctgatatgttttgtggttggacacaacacctagcttctcaactcaacattcgtagacttgttttct |
24462952 |
T |
|
| Q |
346 |
ctccttctggtgcttttgctttctccaccatgtgcttcaactggaagcatctaccatcacgtgtaaaccctaatgacgaaaacgaggttgttttgtatca |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24462951 |
ctccttctggtgcttttgctttctccaccatgtgcttcaactggaagcatctaccatcacgtgtaaaccctaatgacgaaaacgaggttgttttgtatca |
24462852 |
T |
|
| Q |
446 |
taacattccgaattctccaaaataccct |
473 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
24462851 |
taacattccgaattctccaaaataccct |
24462824 |
T |
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