View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_3 (Length: 480)
Name: NF16180_low_3
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 35429447 - 35429904
Alignment:
| Q |
9 |
gagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgtgggtt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35429447 |
gagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgttggtt |
35429546 |
T |
|
| Q |
109 |
tgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttca |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429547 |
tgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttca |
35429646 |
T |
|
| Q |
209 |
tacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429647 |
tacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaa |
35429746 |
T |
|
| Q |
309 |
gagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgt |
408 |
Q |
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| T |
35429747 |
gagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgt |
35429846 |
T |
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| Q |
409 |
gggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtatt |
466 |
Q |
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| T |
35429847 |
gggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtatt |
35429904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 35420308 - 35420765
Alignment:
| Q |
9 |
gagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgtgggtt |
108 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35420308 |
gagatgaatgtgctgctccttagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctatttatcaacaaaatgtgggtt |
35420407 |
T |
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| Q |
109 |
tgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttca |
208 |
Q |
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|||||| |||||| | || ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35420408 |
tgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttca |
35420507 |
T |
|
| Q |
209 |
tacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaa |
308 |
Q |
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| T |
35420508 |
tacaaaatgctctcatatttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaa |
35420607 |
T |
|
| Q |
309 |
gagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35420608 |
gagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgt |
35420707 |
T |
|
| Q |
409 |
gggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtatt |
466 |
Q |
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| T |
35420708 |
gggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtatt |
35420765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 35423499 - 35423604
Alignment:
| Q |
201 |
ctctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| || |||||||| |||| || || | |||||||| ||| ||| |
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| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtattagcaagtggattgatcgatgcatcgatcgctcatcttcttattcttgcccattgt |
35423598 |
T |
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| Q |
301 |
gtcgac |
306 |
Q |
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| T |
35423599 |
gtcgac |
35423604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 42974029 - 42974125
Alignment:
| Q |
150 |
gataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
246 |
Q |
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||||||||||| ||||||||||||||||| || | |||||| ||| |||||| ||| |||||| || |||||||| |||||||||||||||| |
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| T |
42974029 |
gataaatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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