View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_4 (Length: 456)
Name: NF16180_low_4
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 72 - 438
Target Start/End: Original strand, 12609776 - 12610140
Alignment:
| Q |
72 |
atagatattaaaaatatatttaatccaaaatacaataatttttgaacccccatttcagaccaagatgaaactatacataattctcccatttacccctacc |
171 |
Q |
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| T |
12609776 |
atagatattaaaaatatatttaatccaaaatacaataatttttgaacccccatttcagaccaagatgaaactatacataattctcccatttacccctacc |
12609875 |
T |
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| Q |
172 |
cataccttaacatagtaacatgttattttttgagaggaacatagtaacatgttatgtctaacnnnnnnnaacaaaagtgaaaaccatgtcaagtgttagt |
271 |
Q |
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| T |
12609876 |
cataccttaacatagtaacatgttattttttgagaggaacatagtaacatgttatgtctatctatttttaacaaaagtgaaaaccatgtcaagtgttagt |
12609975 |
T |
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| Q |
272 |
aagttatacatgcaaatccattacacctcagtattgtaccctctttaatgtacacacatatataattattatttcatatatgctatgtcacaaagcacaa |
371 |
Q |
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| T |
12609976 |
aagttatacatgcaaatccattacacctcagtattgtaccctctttaatgtacacac--atataattattatttcatatatgcaatgtcacaaagcacaa |
12610073 |
T |
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| Q |
372 |
tataaccctagtacaattcatcactcnnnnnnnatgtttaaatataagcagccccccacttccccct |
438 |
Q |
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| T |
12610074 |
tataaccctagtacaattcatcactctttttatatgtttaaatataagcagccccccactcccccct |
12610140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 12609666 - 12609704
Alignment:
| Q |
125 |
ttcagaccaagatgaaactatacataattctcccattta |
163 |
Q |
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| T |
12609666 |
ttcagaccaagatgaaactatacataattctcccattta |
12609704 |
T |
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