View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_5 (Length: 322)
Name: NF16180_low_5
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 91 - 313
Target Start/End: Complemental strand, 8175160 - 8174937
Alignment:
| Q |
91 |
ttagaatcaaagcttttaaagaaagaaaaggatatcaattgtacttaaggttgcatatcaggtagataagaattgcaagtcaagggaattgcaagtcata |
190 |
Q |
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| T |
8175160 |
ttagaatcaaagcttttaaagaaagaaaaggatatcaattgtacttaaggttgcatatgaggtagataagaattgcaagtcaagggaattgcaagtcata |
8175061 |
T |
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| Q |
191 |
atggactttaaaatgggaaattcacaagacaccaaaaggattaataatgacagaaagttaacnnnnnnntggacaagatcagaagcagagaaacaatgca |
290 |
Q |
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| T |
8175060 |
atggactttaagatgggaaattcacaagacaccaaaaggattaataatggcagaaagataac-aaaaaatgcacaagatcagaagcagagaaacaatgca |
8174962 |
T |
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| Q |
291 |
caaaaac--gtttcaagattttctt |
313 |
Q |
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| T |
8174961 |
caaaaactagtttcaagattttctt |
8174937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 21414377 - 21414472
Alignment:
| Q |
82 |
tctcagaagttagaatcaaagcttttaaagaaagaaaaggatatcaattgtacttaaggttgcatatcaggtagataagaattgcaagtcaaggga |
177 |
Q |
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| T |
21414377 |
tctcaaaagttaggatcaaagcttttgaaataaggaatgaagatcaactgtacttgaggttgcatatcaggtagatgagaattgccattcaaggga |
21414472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 25229072 - 25229195
Alignment:
| Q |
49 |
aagttcagaattggttcttatcaaagattttcatctcagaagttagaatcaaagcttttaaagaaagaaaaggatatcaattgtacttaaggttgcatat |
148 |
Q |
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| T |
25229072 |
aagttcataattggttctcaacactgattctcatctcagaagttaggataaaagcttttgaagaaagtaatgaagatcaactgtacttgaagttgtagat |
25229171 |
T |
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| Q |
149 |
caggtagataagaattgcaagtcaa |
173 |
Q |
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| T |
25229172 |
ca-gtcgatcaaaattgcaagtcaa |
25229195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 17747400 - 17747478
Alignment:
| Q |
99 |
aaagcttttaaagaaagaaaaggatatcaattgtacttaaggttgcatatcaggtagataagaattgcaagtcaaggga |
177 |
Q |
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| T |
17747400 |
aaagtttttgaagaaaggaatgaagatcaattatacttgaggttgcatattaggtagatcggatttgcaagtcaaggga |
17747478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 33385710 - 33385760
Alignment:
| Q |
124 |
atcaattgtacttaaggttgcatatcaggtagataagaattgcaagtcaag |
174 |
Q |
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| T |
33385710 |
atcaattgtactaaaggttgcagattaggtagatcataattgcaagtcaag |
33385760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 10916415 - 10916456
Alignment:
| Q |
133 |
acttaaggttgcatatcaggtagataagaattgcaagtcaag |
174 |
Q |
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| T |
10916415 |
acttaaggttgcagatcaggtagatcagaattgcaaggcaag |
10916456 |
T |
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