View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_6 (Length: 307)
Name: NF16180_low_6
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 24232058 - 24231775
Alignment:
| Q |
16 |
gatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttggagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24232058 |
gatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttggagtggtaaaaagagtaacgtgaaaattttgatggtaaatatcaatctaa |
24231959 |
T |
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| Q |
116 |
attttcatggtaaatagcttaatttaacaaacatatctaattgagnnnnnnnnnnnnnnnnnnngttcaatttcaacagaatttaggttttatgtttgtc |
215 |
Q |
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| T |
24231958 |
attttcatggtaaatagcttaatttaacaaacatatctaattgag--------tttttttttttgttcaatttcaacagaatttaggttttatgtttgtc |
24231867 |
T |
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| Q |
216 |
aacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgtcatggtcttgggatgcaataatattacatttgatggctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24231866 |
aacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgtcatggtcttgggatgcaataattttacatttgatggctt |
24231775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 24243596 - 24243469
Alignment:
| Q |
180 |
gttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgtcatggtcttgg |
279 |
Q |
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|||||||||||||||||||| ||||||| || |||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
24243596 |
gttcaatttcaacagaatttcggttttaatttcgtcaacaattccctcgtccacggcgttacttctaaggacagcaaaaatttccatgttatggttttcg |
24243497 |
T |
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| Q |
280 |
gatgcaataatattacatttgatggctt |
307 |
Q |
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| T |
24243496 |
gatgcaataatattacatttgatagctt |
24243469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 24298602 - 24298729
Alignment:
| Q |
180 |
gttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgtcatggtcttgg |
279 |
Q |
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|||||||||||||||||||| ||||||| || |||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
24298602 |
gttcaatttcaacagaatttcggttttaatttcgtcaacaattccctcgtccacggcgttacttctaaggacagcaaaaatttccatgttatggttttcg |
24298701 |
T |
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| Q |
280 |
gatgcaataatattacatttgatggctt |
307 |
Q |
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| T |
24298702 |
gatgcaataatattacatttgatagctt |
24298729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 24243769 - 24243665
Alignment:
| Q |
16 |
gatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttggagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaa |
115 |
Q |
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||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||| |
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| T |
24243769 |
gatggtcaaggtgcatctgtttacaaaaaagctcaacctgcagctgcttggagtggtaaaggcggtaactcaaaaaatttcatggtaaatatcaatctaa |
24243670 |
T |
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| Q |
116 |
atttt |
120 |
Q |
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||||| |
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| T |
24243669 |
atttt |
24243665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 24298429 - 24298533
Alignment:
| Q |
16 |
gatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttggagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaa |
115 |
Q |
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||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||| |
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| T |
24298429 |
gatggtcaaggtgcatctgtttacaaaaaagctcaacctgcagctgcttggagtggtaaaggcggtaactcaaaaaatttcatggtaaatatcaatctaa |
24298528 |
T |
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| Q |
116 |
atttt |
120 |
Q |
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||||| |
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| T |
24298529 |
atttt |
24298533 |
T |
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