View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16180_low_8 (Length: 263)
Name: NF16180_low_8
Description: NF16180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16180_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 35429674 - 35429904
Alignment:
| Q |
19 |
agagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429674 |
agagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaa |
35429773 |
T |
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| Q |
119 |
tatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429774 |
tatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcagg |
35429873 |
T |
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| Q |
219 |
tctgtgtcgtgctttctgcttcgtctgtatt |
249 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
35429874 |
tctgtgtcgtgctttctgctttgtctgtatt |
35429904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 35420535 - 35420765
Alignment:
| Q |
19 |
agagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420535 |
agagtgtattgcccagttgatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaa |
35420634 |
T |
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| Q |
119 |
tatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420635 |
tatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcagg |
35420734 |
T |
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| Q |
219 |
tctgtgtcgtgctttctgcttcgtctgtatt |
249 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
35420735 |
tctgtgtcgtgctttctgctttgtctgtatt |
35420765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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