View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16181_high_11 (Length: 298)
Name: NF16181_high_11
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 7197477 - 7197215
Alignment:
| Q |
17 |
caaaggaattagaggaccttgtaatggaagaatttttctttgaattttgcttaacattagaaccttcctttgatagcatcctcttaacacttgttgatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197477 |
caaaggaattagaggaccttgtaatggaagaatttttctttgaattttgcttaacattagaaccttcctttgatagcatcctcttaacacttgttgatga |
7197378 |
T |
|
| Q |
117 |
acctgttgaattgcttttagaaagaagtggcaaaggacataaacttctaccatatccacttccacaactactacttctcttgaacccccaaaatgactta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197377 |
acctgttgaattgcttttagaaagaagtggcaaaggacataaacttctaccatatccacttccacaactactacttctcttgaacccccaaaatgactta |
7197278 |
T |
|
| Q |
217 |
gaatttgaactatgcttctcatccacttcatcaatattattcaactctttcacatcttttgtg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197277 |
gaatttgaactatgcttctcatccacttcatcaatattattcaactctttcacatcttttgtg |
7197215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 31483923 - 31483795
Alignment:
| Q |
121 |
gttgaattgcttttagaaagaagtggcaaaggacataaacttctaccatatccacttccacaactactacttctcttgaacccccaaaatgacttagaat |
220 |
Q |
| |
|
|||||||||||| |||| | |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
31483923 |
gttgaattgcttctagataaaagtggtaaaggacacaaacttcttccatatccacttccacaactactacttctcttgaagctccaaaatgacttggaat |
31483824 |
T |
|
| Q |
221 |
ttgaactatgcttctcatccacttcatca |
249 |
Q |
| |
|
||||||| || |||||| |||||||||| |
|
|
| T |
31483823 |
ttgaactttgtttctcacacacttcatca |
31483795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University