View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_high_18 (Length: 244)
Name: NF16181_high_18
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 15926615 - 15926728
Alignment:
| Q |
34 |
aatgtgaaattgtcaaaatgacttataggtaaatatttcatttacatttgtacatggatatccctatccgggttggtgtaaatttttccaca--agagca |
131 |
Q |
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| T |
15926615 |
aatgtgaaatcgtcaaaatgacttataggtaaatatttcatttacatttgtacatggatatccctatccgggttggtgtaaatttttccacaagagagca |
15926714 |
T |
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| Q |
132 |
aaattaaatcattt |
145 |
Q |
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| T |
15926715 |
aaattaaatcattt |
15926728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 15926799 - 15926848
Alignment:
| Q |
139 |
atcatttgtttacctcggaataaacccaacataagatttcattacaaaag |
188 |
Q |
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| T |
15926799 |
atcatttgtttacctccgaataaacccaacataagatttcattacaaaag |
15926848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 15926908 - 15926945
Alignment:
| Q |
189 |
ttcttttataattcagctcaaagttcgtatgtagagat |
226 |
Q |
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| T |
15926908 |
ttcttttataattcagctcaaagttcgtatgtagagat |
15926945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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