View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16181_high_19 (Length: 241)
Name: NF16181_high_19
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 9830321 - 9830112
Alignment:
| Q |
15 |
gatgaaagtgtaattcaagtttcttttaggggaatggagtataatttactctatcttatttcatcccaaaatatataggcatcgattaatttctttcttg |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9830321 |
gatgaaagtgtaattcaagcttcttttaggggaagggagtataatttactctatcttatttcatcccaaaatatatacgcatcgattaatttctttcttg |
9830222 |
T |
|
| Q |
115 |
aattttttgaaatagttaataggtccttgaattttaaagatgtcgatcgaattaatctcttcgtcaagtctcgtcgttaataatattgatgtgtcacatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9830221 |
aattttttgaaatagttaataggtccttgaattttaaagatgtcgatcgaattaatctcttcgtcaagtctcgccgttaataatattgatgtgtcacatt |
9830122 |
T |
|
| Q |
215 |
atgcgttgtt |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
9830121 |
atgcgttgtt |
9830112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 33314634 - 33314680
Alignment:
| Q |
21 |
agtgtaattcaagtttcttttaggggaatggagtataatttactcta |
67 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
33314634 |
agtgtaattcaaacttcttttagagaaatggagtataatttactcta |
33314680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 20269136 - 20269054
Alignment:
| Q |
112 |
ttgaattttttgaaatagttaataggtccttgaattttaaagatgtcgatcgaattaatctcttcgtcaagtctcgtcgttaa |
194 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| | | | |||| |||| |||||| ||||||||||||| ||||| |
|
|
| T |
20269136 |
ttgaattttttgaaatagctaatagatccttgaattttataaacattgatcaaattgatctctccgtcaagtctcgttgttaa |
20269054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 2074750 - 2074795
Alignment:
| Q |
21 |
agtgtaattcaagtttcttttaggggaatggagtataatttactct |
66 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
2074750 |
agtgtaattcaagtttctcttagggaaggggagtataatttactct |
2074795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 11051597 - 11051552
Alignment:
| Q |
21 |
agtgtaattcaagtttcttttaggggaatggagtataatttactct |
66 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
11051597 |
agtgtaattcaagtatcttttaggggaggggagtgtaatttactct |
11051552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University