View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_high_20 (Length: 224)
Name: NF16181_high_20
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 42418223 - 42418415
Alignment:
| Q |
14 |
caaaggtgagaagaagagaaaccacaaagttatggggtcttcaactttctcttaattgaattgaaggggttggtactcaataataactgacnnnnnnngg |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42418223 |
caaaggtgagaagaggagaaaccacaaagttatggggtcttcaactctctcttaattgaattgaaggggttggtactcaataataactgacaaaaaaagg |
42418322 |
T |
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| Q |
114 |
aacttttaatgtcaaacgtctctaccacaagtgctatttgaagttaactactcactagaagggtccaaaattaaagcaattaaatggtccacc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42418323 |
aacttttaatgtcaaacgtctctaccacaagtgctatttgaagttaactactcactagaagggtccaaaattaaagcaattaaatggtccacc |
42418415 |
T |
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