View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_high_5 (Length: 395)
Name: NF16181_high_5
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 13870975 - 13871354
Alignment:
| Q |
20 |
cgaatgagaacaagtatgaagcacatacacccctaatagtttaagaaaatgaaagtaattgaatataacatgtgtcaatgtcaaaaatcagacatgacat |
119 |
Q |
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| T |
13870975 |
cgaatgagaacaagtatgaagcacatacacccctaatagtttaagaaaatgaaagtaattgaatataacatgtgtcaatgtcaaaaatcagacatgacat |
13871074 |
T |
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| Q |
120 |
caatctgaagtgtcggagctacatgtgactattccatcacatca--ccggt-------------gaagatgatgcatttaccggtatagggatcaagttt |
204 |
Q |
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| T |
13871075 |
caatctgaagtgtcggagctacatatgactattcgatcacatcattcaagttaatcacttatgcgaagatgatagatttaccggtatagggatcaagttt |
13871174 |
T |
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| Q |
205 |
tggatgagaagtgaaataatggtccaatcttttgtcataatctagtataccaagtgtatgcaaatcaccatcttcaaaaactttaatagcatctgcaaaa |
304 |
Q |
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| T |
13871175 |
tggatgagaagtgaaataatggtccaatcttttgtcataatctagtataccaagtgtatgcaaatcaccatcttcaaaaactttaatagcatctgcaaaa |
13871274 |
T |
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| Q |
305 |
ttcaaaataacaacacttgagttgtatagcagaagtggtaaatacacaggtcacatgaatctttttaaccactttgttct |
384 |
Q |
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| T |
13871275 |
ttcaaaataacaacacttgagttgtatagcagaagtggtaaatacacaggtcacatgaatctttttaaccactttgttct |
13871354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 13852121 - 13852463
Alignment:
| Q |
20 |
cgaatgagaacaagtatgaagcacatacacccctaatagtttaagaaaatgaaagtaattgaatataacatgtgtcaatgtcaaaaatcagacatgacat |
119 |
Q |
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| T |
13852121 |
cgaatgagaacaagtatgatgcacatacacccctaatagtttaagaaaatgaaattaattgaatat-----gtgccaatctcaaaaatcagacatgacat |
13852215 |
T |
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| Q |
120 |
caatctgaagtgtcggagctacatgtgactattccatcacatca--ccggt-------------gaagatgatgcatttaccggtatagggatcaagttt |
204 |
Q |
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| T |
13852216 |
caatctgaggtgccggagctacatatgaattttccattacatcagtcaagttaatcacttatgcgaagatgatggatttaccagtaaaaggatcaacttt |
13852315 |
T |
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| Q |
205 |
tggatgagaagtgaaataatggtccaatcttttgtcataatctagtataccaagtgtatgcaaatcaccatcttcaaaaactttaatagcatctgcaaaa |
304 |
Q |
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| T |
13852316 |
tggatgagcggtgaaataatggtcaagtctcttttcataatctaacataccaagtgtatgcaaatcaccatcttcaaaaactttaatagcatctgcaaac |
13852415 |
T |
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| Q |
305 |
ttcaaaataacaacacttgagttgtatagcagaagtggtaaatacaca |
352 |
Q |
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| T |
13852416 |
ttcaaaacaacactacttgagttctatagcacatgtagtaaatacaca |
13852463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 168 - 352
Target Start/End: Original strand, 13893516 - 13893700
Alignment:
| Q |
168 |
tgaagatgatgcatttaccggtatagggatcaagttttggatgagaagtgaaataatggtccaatcttttgtcataatctagtataccaagtgtatgcaa |
267 |
Q |
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||||||||||| ||||||| ||| | ||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
13893516 |
tgaagatgatggatttaccagtaaaaggatcaacttttggatgagcagtgaaataatggtctagtcttttgtcataatctagcataccaagtgtatgcaa |
13893615 |
T |
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| Q |
268 |
atcaccatcttcaaaaactttaatagcatctgcaaaattcaaaataacaacacttgagttgtatagcagaagtggtaaatacaca |
352 |
Q |
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| T |
13893616 |
atcaccatcttcaaaaactttaatagcatctgcaaatttcaaaataacactacttgagttcaaaagcacatgtggtaaatacaca |
13893700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 13900169 - 13900287
Alignment:
| Q |
194 |
ggatcaagttttggatgagaagtgaaataatggtccaatcttttgtcataatctagtataccaagtgtatgcaaatcaccatcttcaaaaactttaatag |
293 |
Q |
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||||||| ||||||||||| ||||| | |||| ||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| |||||||||| |
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| T |
13900169 |
ggatcaacttttggatgagcggtgaagttatggcccaatctcttgtcataatctagcatgccaagtgtctgcaaatcaccgtcttcaaatactttaatag |
13900268 |
T |
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| Q |
294 |
catctgcaaaattcaaaat |
312 |
Q |
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| T |
13900269 |
catctgcaaaatttaaaat |
13900287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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