View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_1 (Length: 546)
Name: NF16181_low_1
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 32707197 - 32707368
Alignment:
| Q |
17 |
actctttaacttgtttctttgattaaattaacaagt------aaccttgaatcattgtatgttttgattcacaatgagttctggaaaatcactgagctaa |
110 |
Q |
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| T |
32707197 |
actctttaacttgtttctttgattaaattaacaagtgttatcaaccttgaatcattgtatgttttgattcacaatgagttctggaaaatcactgagctaa |
32707296 |
T |
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| Q |
111 |
gaagaatccatcaaatcactcttcagccaactcatcagtgacaacctcatctgcttcattccaagtgaacgt |
182 |
Q |
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| T |
32707297 |
gaagaatccatcaaatcactcttcagccaactcatcagtgacaacctcatctgcttcagtccaagtgaacgt |
32707368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 204 - 367
Target Start/End: Original strand, 32707678 - 32707839
Alignment:
| Q |
204 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagttttcctaaaacaattatgttttcgcagttt |
303 |
Q |
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| T |
32707678 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagtttttctaaaacaattatgttttcgcagttt |
32707777 |
T |
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| Q |
304 |
tctataattnnnnnnnnnnnngcgtacaaagtgaaaataagatggtattttctgtaataattag |
367 |
Q |
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| T |
32707778 |
tctataatt-aaaaaaaaaaagcg-acaaagtgaaaataagatggtattttctgtaataattag |
32707839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 32707907 - 32708003
Alignment:
| Q |
435 |
aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt |
531 |
Q |
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| T |
32707907 |
aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt |
32708003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 16959676 - 16959622
Alignment:
| Q |
442 |
tcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgat |
496 |
Q |
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| T |
16959676 |
tctttaagctcataaaggtttcttgccctcaccaacacaccaaaaaaggaatgat |
16959622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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