View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_10 (Length: 323)
Name: NF16181_low_10
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 32542247 - 32542551
Alignment:
| Q |
15 |
gatgaagtgtacggagtaggaaagtatgaacctgaggttggtgatctcattgcattcacaaatattcgaccaagaagcgtgtatgacttgagtaggatga |
114 |
Q |
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| T |
32542247 |
gatgaagtctacggagtaggaaagtatgaacctgaggttggtgatctcattgcattcacaaatattcgaccaagaagtgtggatgacttgagtcggatca |
32542346 |
T |
|
| Q |
115 |
aaagatactgtcatatagcttatattcatggatcaaaagatgaatttactgatgagattcctatactgttgtcatatgagtttgacttgaagaggaacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32542347 |
aaagatactgtcatatagcttatattcatggatcaaaagatgaatttactgatgagattcctatactgttgtcatatgagtttgacttgaagaggaacaa |
32542446 |
T |
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| Q |
215 |
agcacagaaactctatgcagtttgtctcattaacatgactactaatgttcgtatttggaaagccttgaactcagagatggagggatcggacatgaatata |
314 |
Q |
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| T |
32542447 |
agcacagaaactctatgcagtttgtctcattaacatgactactaatgttcgtatttggaaagccttgaactcagagatggagggatcggacatgaatata |
32542546 |
T |
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| Q |
315 |
attca |
319 |
Q |
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||||| |
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| T |
32542547 |
attca |
32542551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 32515505 - 32515194
Alignment:
| Q |
18 |
gaagtgtacggagtaggaaagtatgaacctgaggttggtgatctcattgcattcacaaatattcgaccaagaagcgtgtatgacttgagtaggatgaaaa |
117 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||| ||| ||||| ||||| ||| |
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| T |
32515505 |
gaagtgtacggtgtaggaaaatatgaacctgaggttggtgacctcgttgcattcacaaatgttcgacctagaagcgtgtctgatttgagcaggatcgaaa |
32515406 |
T |
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| Q |
118 |
gatactgtcatatagcttatattcatggatcaaaagatgaatttactgatgagattcctatactgttgtcatatgag------------tttgacttgaa |
205 |
Q |
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| T |
32515405 |
gatattgtcacataggttatatttgtggatcaaaagatgaacttaatgatcagattactatgctgttgtccaaggagatgcataacaacattgatttgag |
32515306 |
T |
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| Q |
206 |
gaggaacaaagcacagaaactctatgcagtttgtctcattaacatgactactaatgttcgtatttggaaagccttgaactcagagatggagggatcggac |
305 |
Q |
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||| |||||||| ||||||||||| | |||| ||||||||||||||| || ||| ||||||||||||| || ||||||||||| ||||| | ||| || |
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| T |
32515305 |
gagtaacaaagcccagaaactctacgttgtttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaac |
32515206 |
T |
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| Q |
306 |
atgaatataatt |
317 |
Q |
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|||||||||||| |
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| T |
32515205 |
atgaatataatt |
32515194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 32567283 - 32567324
Alignment:
| Q |
246 |
aacatgactactaatgttcgtatttggaaagccttgaactca |
287 |
Q |
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|||||||| || |||||||||||||||||||||||| ||||| |
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| T |
32567283 |
aacatgacaacaaatgttcgtatttggaaagccttgcactca |
32567324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 32647096 - 32647055
Alignment:
| Q |
246 |
aacatgactactaatgttcgtatttggaaagccttgaactca |
287 |
Q |
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|||||||| || |||||||||||||||||||||||| ||||| |
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| T |
32647096 |
aacatgacaacaaatgttcgtatttggaaagccttggactca |
32647055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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