View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16181_low_12 (Length: 295)

Name: NF16181_low_12
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16181_low_12
NF16181_low_12
[»] chr1 (2 HSPs)
chr1 (22-286)||(19192925-19193187)
chr1 (58-285)||(44200100-44200326)
[»] scaffold0683 (1 HSPs)
scaffold0683 (66-286)||(7717-7936)
[»] chr7 (1 HSPs)
chr7 (107-286)||(39440350-39440527)
[»] chr2 (2 HSPs)
chr2 (197-285)||(29468000-29468085)
chr2 (84-147)||(27542124-27542187)
[»] scaffold0557 (1 HSPs)
scaffold0557 (197-285)||(7165-7250)
[»] chr8 (2 HSPs)
chr8 (197-281)||(8224457-8224538)
chr8 (197-268)||(7964211-7964279)
[»] chr6 (3 HSPs)
chr6 (197-285)||(15906340-15906425)
chr6 (197-285)||(18716000-18716085)
chr6 (197-276)||(14464218-14464293)
[»] chr5 (3 HSPs)
chr5 (197-281)||(42882323-42882404)
chr5 (55-149)||(17327751-17327845)
chr5 (111-149)||(20249700-20249738)
[»] chr4 (1 HSPs)
chr4 (197-285)||(19111357-19111442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (68-129)||(414246-414307)
[»] scaffold0726 (1 HSPs)
scaffold0726 (222-285)||(5101-5162)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 19193187 - 19192925
Alignment:
Q  22 catataaaaacatttgattctatttattcagatgtatatgttttactaacaacactcaattcattgctattattgatacggatgcgactcattattttat 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  19193187 catataaaaacatttaattctatttattcagatgtatatgttttactaacaacactcaattcattgctattattgatacgaatgtgactgattattttat 19193088  T
Q  122 ttctcttggttgtgctaagtgtttgaataaaaaagtgattattgataatgtaaacctttaaaaaatgacaccatttttgttgtcgataatgtaacaccat 221  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19193087 ttctcttggttgtgctaagcgtttgaataaaaaagtgattattcataatgtaaacc-ttaaaaaatgacaccatttttgttgtcgataatgtaacaccat 19192989  T
Q  222 tttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttct 286  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||    
T  19192988 tttttcgataacttcaaaatctt-tttttttcgttccacttgatcttctactgctctcttcttct 19192925  T

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Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 58 - 285
Target Start/End: Complemental strand, 44200326 - 44200100
Alignment:
Q  58 tatgttttactaacaacactcaattcattgctattattgatacggatgcgactcattattttatttctcttggttgtgctaagtgtttgaataaaaaagt 157  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  44200326 tatgttttactaacaacactcaattcatcgctattattaatacggatgcgactcattattttagttctcttggttgtgctaagcgtttgaataaaaaagt 44200227  T
Q  158 gattattgataatgtaaacctttaaaaaatgacaccatttttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttc 257  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44200226 gattattgttaatgtaaacctttaaaaaatgacaccatttttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttctttttt-cgttc 44200128  T
Q  258 cacttgatctttttctgctctcttcttc 285  Q
    ||||||||||| ||||||||||||||||    
T  44200127 cacttgatcttcttctgctctcttcttc 44200100  T

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Target: scaffold0683 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 7936 - 7717
Alignment:
Q  66 actaacaacactcaattcattgctattattgatacggatgcgactcattattttatttctcttggttgtgctaagtgtttgaataaaaaagtgattattg 165  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7936 actaacaacactcaattcattgttattattgatacgaatgcgactcattattttatttctcttggctgtgctaagcgtttgaataaaaaagtgattattg 7837  T
Q  166 ataatgtaaacctttaa-aaaatgacaccatttttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttga 264  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||  |||||| ||||    
T  7836 ataatgtaaacctttaaaaaaatgacaccatttttgttgtcgataatgtaacacta-tttttcaataacttcaaaatctt-ttttttttgttccatttga 7739  T
Q  265 tctttttctgctctcttcttct 286  Q
    |||| |||||||||||||||||    
T  7738 tcttcttctgctctcttcttct 7717  T

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Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 39440350 - 39440527
Alignment:
Q  107 gactcattattttatttctcttggttgtgctaagtgtttgaataaaaaagtgattattgataatgtaaacctttaaaaaatgacaccatttttgttgtcg 206  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39440350 gactcattattttatttctcttagttgtactaagcgtttgaataaaaaagtgattattgatgatgtaaacctttaaaaaatgacaccatttttgttgtcg 39440449  T
Q  207 ataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttct 286  Q
    |||||| || ||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||| |||||||||    
T  39440450 ataatgcaataccattttttcgataacttcaaattcttcttttt--cgttccacttgatcttcttctgctatcttcttct 39440527  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 29468085 - 29468000
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||    
T  29468085 tttgttgtcgataatgtagcaccatttttt-gataacttcaaattcttcttttt--cgttccacttgatcttcttctgctctcttcttc 29468000  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 27542187 - 27542124
Alignment:
Q  84 attgctattattgatacggatgcgactcattattttatttctcttggttgtgctaagtgtttga 147  Q
    ||||||||||||||||||| |||||| | || |||||||||||||||||| || || |||||||    
T  27542187 attgctattattgatacgggtgcgacacgttcttttatttctcttggttgcgcgaaatgtttga 27542124  T

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Target: scaffold0557 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 7165 - 7250
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||  ||||||||| |||||| ||||||||||||||||    
T  7165 tttgttgtcgataatgtagcaccattttt-cgataacttcaaattcttcttttt--cgttccactcgatcttcttctgctctcttcttc 7250  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 8224457 - 8224538
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctctt 281  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  ||||||||| |||||| ||||||||||||    
T  8224457 tttgttgtcgataatgtagcaccatttttt-gataacttcaaattcttcttttt--cgttccactcgatcttcttctgctctctt 8224538  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 7964279 - 7964211
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctt 268  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||  ||||||||| ||||||    
T  7964279 tttgttgtcgataatgtagcaccatttttt-gattacttcaaattcttcttttt--cgttccactcgatctt 7964211  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 15906425 - 15906340
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    |||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||  ||||||||| |||||| ||||||||||||||||    
T  15906425 tttgttgttgataatgtagcaccatttttt-gataacttcaaattcttcttttt--cgttccactcgatcttcttctgctctcttcttc 15906340  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 18716000 - 18716085
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  ||||||| | |||||| ||||||||||||||||    
T  18716000 tttgttgtcgataatgtagcaccatttttt-gataacttcaaattcttcttttt--cgttccagtcgatcttcttctgctctcttcttc 18716085  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 14464218 - 14464293
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgct 276  Q
    |||||||| |||| |||||||||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  14464218 tttgttgtagata-tgtaacaccatttttt-gataacttcaaattcttcttttt--cgttccacttgatcttcttctgct 14464293  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 42882404 - 42882323
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctctt 281  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  ||||||||| |||||| ||||||||||||    
T  42882404 tttgttgtcgataatgtagcaccatttttt-gataacttcaaattcttcttttt--cgttccactcgatcttcttctgctctctt 42882323  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 17327845 - 17327751
Alignment:
Q  55 gtatatgttttactaacaacactcaattcattgctattattgatacggatgcgactcattattttatttctcttggttgtgctaagtgtttgaat 149  Q
    |||| ||||||| |||||||||||  ||  |||||||||||||||  | |||| | ||||  |||||||||||||||||||||||| ||||||||    
T  17327845 gtatttgttttattaacaacactcttttgcttgctattattgatattggtgcgtcacattcctttatttctcttggttgtgctaagcgtttgaat 17327751  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 20249700 - 20249738
Alignment:
Q  111 cattattttatttctcttggttgtgctaagtgtttgaat 149  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  20249700 cattcttttatttctcttggttgtgctaagagtttgaat 20249738  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 19111442 - 19111357
Alignment:
Q  197 tttgttgtcgataatgtaacaccattttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    |||||||||||||||||| || |||||||| |||||||||||| ||||||||||  ||||||||| |||||| | ||||||||||||||    
T  19111442 tttgttgtcgataatgtagcatcatttttt-gataacttcaaattcttcttttt--cgttccactcgatcttctcctgctctcttcttc 19111357  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 414307 - 414246
Alignment:
Q  68 taacaacactcaattcattgctattattgatacggatgcgactcattattttatttctcttg 129  Q
    |||||||||||  || ||||||||||||||| |||||||||  |||||||||||||||||||    
T  414307 taacaacactcctttgattgctattattgattcggatgcgatgcattattttatttctcttg 414246  T

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Target: scaffold0726 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 5162 - 5101
Alignment:
Q  222 tttttcgataacttcaaaatcttcttttttacgttccacttgatctttttctgctctcttcttc 285  Q
    ||||| |||||||||||| ||||||||||  ||||||||  |||||| |||||| |||||||||    
T  5162 ttttttgataacttcaaattcttcttttt--cgttccacacgatcttcttctgcactcttcttc 5101  T

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