View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_13 (Length: 295)
Name: NF16181_low_13
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 32542538 - 32542805
Alignment:
| Q |
12 |
atgaatataattcaaaaagtgttgcagccttattcaagggtaagaatcacaatttgttattcatcttagacttatgtgacctttctttacgtctttatat |
111 |
Q |
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| T |
32542538 |
atgaatataattcaaaaagtgttgcagccttattcaagggtaagaatcacaatttgttattcatcctagacttctgtgacctttctttacatctttatat |
32542637 |
T |
|
| Q |
112 |
aatcaaagctctaaatcgcattttcatggtattacagagaatcatgatcaaattcagttgacgtggtcccaattgcaattttgctataaagtgataacaa |
211 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32542638 |
aatcaaagctctaaatcgcattttcatggtattgcagagaatcatgatcaaattcagctgacgtggccccaattgcaattttgctataaagtgataacaa |
32542737 |
T |
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| Q |
212 |
atttaataccatagatttagattgcattcgttagcctcaatgtttatgttatttttgcgactgctatt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32542738 |
atttaataccatagatttagattgcattcgttagcctcaatgtttatgttatttttgcgactgctatt |
32542805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 32515205 - 32515154
Alignment:
| Q |
12 |
atgaatataattcaaaaagtgttgcagccttattcaagggtaagaatcacaa |
63 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
32515205 |
atgaatataattaaaaaagtgttgcagccatattcaagggtaagaatcacaa |
32515154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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