View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_14 (Length: 284)
Name: NF16181_low_14
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 40660804 - 40661055
Alignment:
| Q |
13 |
aagaacgtgattaaagaattttgaacaataaaatctcaagatacgatcaat-tttggaatagtattaagcttcacttatggtggtgcttaaaggcgaata |
111 |
Q |
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| T |
40660804 |
aagaacgtaattaaagaattttgaacaacaaaatttcgaggtaccatcaaactttggaatagtattaagcttcacttatggtggtggttaaaggcgaata |
40660903 |
T |
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| Q |
112 |
agctgtaatctactcttgcttttcacttttggtgctcttcaccgtcactttgtatagggtacaccacaactttgtaattgtggttcttgcttttatcatc |
211 |
Q |
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| T |
40660904 |
agccgtgatcgacttttgcttttcacttttggtgctcttcaccgtcactttgtatagggtataccacaactttgtaattgtgcttcttgcttttatcatc |
40661003 |
T |
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| Q |
212 |
tctattattttgactcattgtattgttttcctttaaggcacatcttgtgcgt |
263 |
Q |
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| T |
40661004 |
tctattattttgactcattgtattgttttcctttaaggcacatcttgtgcgt |
40661055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 15961123 - 15960996
Alignment:
| Q |
133 |
ttcacttttggtgctcttcaccgtcactttgtatagggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgt |
232 |
Q |
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| T |
15961123 |
ttcacttttggtggtcttcaccgttactctgtatagggtacaccacaagtttgtaattgtagttcttgcttttgtcatctttattatgtttactctttgt |
15961024 |
T |
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| Q |
233 |
attgttttcctttaaggcacatcttgtg |
260 |
Q |
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| T |
15961023 |
atttttttcccttttggcacaccttgtg |
15960996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 31060666 - 31060785
Alignment:
| Q |
136 |
acttttggtgctcttcaccgtcactttgtatagggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgtatt |
235 |
Q |
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| T |
31060666 |
acttttgatggtcttcaccgtcactctgtataaggtacacaacaactttgtaattgtcgttct--------tcatctttattatgttgactatttgtatt |
31060757 |
T |
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| Q |
236 |
gttttcctttaaggcacatcttgtgcgt |
263 |
Q |
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| T |
31060758 |
attttccctttaggcacatcttgcgcgt |
31060785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 50481775 - 50481712
Alignment:
| Q |
178 |
caactttgtaattgtggttcttgc-ttttatcatctctattattttgactcattgtattgtttt |
240 |
Q |
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| T |
50481775 |
caactttgtaattttggttcttgctttttgtcatctttattattatgactctttgtattttttt |
50481712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 38087628 - 38087562
Alignment:
| Q |
169 |
ggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactcattgtatt |
235 |
Q |
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| T |
38087628 |
ggtacaccaaaactttgtaattgtggttcttacttctgtcatctttaatattttgactctttgtatt |
38087562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 33964973 - 33964902
Alignment:
| Q |
156 |
tcactttgtatagggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgactc |
227 |
Q |
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| T |
33964973 |
tcactttgtttatgatacaccacaactttgtaatagttattcttactttcatcatctttattattttgactc |
33964902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 39723912 - 39723973
Alignment:
| Q |
164 |
tatagggtacaccacaactttgtaattgtggttcttgcttttatcatctctattattttgac |
225 |
Q |
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| T |
39723912 |
tataggttataccacaactttgtaatcgtggttcttgtttttgttatctttattattttgac |
39723973 |
T |
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