View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_15 (Length: 276)
Name: NF16181_low_15
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 54972958 - 54972709
Alignment:
| Q |
11 |
ttatacttggtggaggagctggaacccgtctcttccctttaactaagcgacgagcaaagcctgctgtaagtttttcttttcttattctttcaccattttc |
110 |
Q |
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| T |
54972958 |
ttatacttggtggaggagctggaacccgtctcttccctttaactaagcgacgagcaaagcctgctgtaagtttttcttttcttattctttcaccattttc |
54972859 |
T |
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| Q |
111 |
tcaattgttccattcattataagcatagtagttgcttatagtttgatcctatgaagcactaacgtaaacacgatagtgacactatcacgtagatataggt |
210 |
Q |
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| T |
54972858 |
tcaattgttccattcattataagcatagtagttgcttatagtttgatcctatgaagcactaacgcaaacacgatagtgacactatcacgtagatataggt |
54972759 |
T |
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| Q |
211 |
aatagtttaagaaaatagagtgattgaatgtaacaataagtgtcggtgtt |
260 |
Q |
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| T |
54972758 |
aatagtttaagaaaatagagtgattgaatgtaacaataagtgttggtgtt |
54972709 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 18421311 - 18421261
Alignment:
| Q |
196 |
cacgtagatataggtaatagtttaagaaaatagagtgattgaatgtaacaa |
246 |
Q |
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| T |
18421311 |
cacgtagatagagataataatttaagaaaatagagtgatcgaatgaaacaa |
18421261 |
T |
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