View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16181_low_16 (Length: 266)

Name: NF16181_low_16
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16181_low_16
NF16181_low_16
[»] chr1 (8 HSPs)
chr1 (16-256)||(48653362-48653602)
chr1 (19-256)||(48617856-48618093)
chr1 (19-254)||(11547475-11547710)
chr1 (205-256)||(48661794-48661845)
chr1 (209-256)||(48667389-48667436)
chr1 (209-256)||(48585569-48585616)
chr1 (60-135)||(48585690-48585765)
chr1 (85-145)||(48629203-48629263)
[»] chr3 (1 HSPs)
chr3 (19-254)||(19665212-19665447)
[»] chr8 (2 HSPs)
chr8 (52-235)||(27228436-27228619)
chr8 (19-156)||(27224312-27224449)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 48653602 - 48653362
Alignment:
Q  16 attttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttg 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653602 attttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttg 48653503  T
Q  116 agttctttgatgattgtttagaagatgatgatcctattagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653502 agttctttgatgattgtttagaagatgatgatcctattagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctca 48653403  T
Q  216 aatgatcaagaatcatgctgagtcgaacaaaccaatttcat 256  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  48653402 aatgatcaagaatcatgctgagtcaaacaaaccaatttcat 48653362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 48617856 - 48618093
Alignment:
Q  19 ttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagt 118  Q
    ||||| |||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| || ||||||||||    
T  48617856 ttcatcacaacagagaaagctggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagt 48617955  T
Q  119 tctttgatgattgtttagaagatgatgatcctattagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctcaaat 218  Q
    |||| |||||| |||||||||||||| ||||| |||||||| || ||   |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  48617956 tcttagatgatggtttagaagatgatcatcctcttagaggaaatcttttaggctacatagaacatctcaaacttgttggaaaaccctttgtttctcaaat 48618055  T
Q  219 gatcaagaatcatgctgagtcgaacaaaccaatttcat 256  Q
    |||||||||||||||||| || ||||||||| ||||||    
T  48618056 gatcaagaatcatgctgattcaaacaaaccattttcat 48618093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 11547710 - 11547475
Alignment:
Q  19 ttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagt 118  Q
    ||||| |||||| | | |||||| |||||||||  ||| |||||||||||| ||||||||||| ||||  |||| ||| ||||||| |||||||||||||    
T  11547710 ttcatcacaacaaagaaagctggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagt 11547611  T
Q  119 tctttgatgattgtttagaagatgatgatcctattagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctcaaat 218  Q
    ||||||||||| ||||| ||||||||||||||||||| | | || ||  ||||||||||| ||| || |||||| |||| ||||| ||| | ||||||||    
T  11547610 tctttgatgatggtttacaagatgatgatcctattagggcaaatctttgtggctacatagaacaactaaaactttttgggaaaccttttttgtctcaaat 11547511  T
Q  219 gatcaagaatcatgctgagtcgaacaaaccaatttc 254  Q
    |||||||||||||| |||||| ||||||||||||||    
T  11547510 gatcaagaatcatgttgagtcaaacaaaccaatttc 11547475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 48661845 - 48661794
Alignment:
Q  205 tttgtttctcaaatgatcaagaatcatgctgagtcgaacaaaccaatttcat 256  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  48661845 tttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcat 48661794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 48667436 - 48667389
Alignment:
Q  209 tttctcaaatgatcaagaatcatgctgagtcgaacaaaccaatttcat 256  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  48667436 tttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcat 48667389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 48585616 - 48585569
Alignment:
Q  209 tttctcaaatgatcaagaatcatgctgagtcgaacaaaccaatttcat 256  Q
    |||||||||||||||||||||||||||| |  ||||||||| ||||||    
T  48585616 tttctcaaatgatcaagaatcatgctgatttaaacaaaccattttcat 48585569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 48585765 - 48585690
Alignment:
Q  60 taacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta 135  Q
    ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| ||||||||||||||| |||||    
T  48585765 taacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggttta 48585690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 48629263 - 48629203
Alignment:
Q  85 actccaattggtgatggttcactcacttttgagttctttgatgattgtttagaagatgatg 145  Q
    |||||||| || |||||||  |||||||| |||||||||||| ||||||||  ||||||||    
T  48629263 actccaataggcgatggttgcctcactttcgagttctttgatcattgtttactagatgatg 48629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 19665212 - 19665447
Alignment:
Q  19 ttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagt 118  Q
    ||||| || ||||| | |||||| ||||||||   ||||||||||||||||| | | |||||| |||||||||| ||||||||||| |||| |||  | |    
T  19665212 ttcatcactacagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccact 19665311  T
Q  119 tctttgatgattgtttagaagatgatgatcctattagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctcaaat 218  Q
    ||||||||||| ||||||||||||||||||| ||||||| |  | ||  ||| |||  | |||||||  | |||||||| | |   ||| ||||||||||    
T  19665312 tctttgatgatggtttagaagatgatgatcccattagagcaagtcttggtggatactcaacacagcttgagcttgttgggacaaagtttctttctcaaat 19665411  T
Q  219 gatcaagaatcatgctgagtcgaacaaaccaatttc 254  Q
    ||| |||||||||  |||||| |||||||| |||||    
T  19665412 gattaagaatcataatgagtcaaacaaacctatttc 19665447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 27228619 - 27228436
Alignment:
Q  52 agaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgtttagaagatgatgatccta 151  Q
    ||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||| ||| | || ||||||||||| ||  |||||  |||||||||||| |    
T  27228619 agaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagacggtttatcagatgatgatccca 27228520  T
Q  152 ttagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctcaaatgatcaagaatcatgctg 235  Q
    |||||| |    |||||  |||| || |||| ||| | || ||||| |||   ||| |||||||||||||||||||||||||||    
T  27228519 ttagagcaagccttactacctacttaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctg 27228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27224449 - 27224312
Alignment:
Q  19 ttcatgacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagt 118  Q
    ||||| |||||||| | |||||| |||||  | |||||||||||||| |||| |||||||| | ||| |||| ||||| ||||||| ||||| ||| |||    
T  27224449 ttcatcacaacagagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagt 27224350  T
Q  119 tctttgatgattgtttagaagatgatgatcctattaga 156  Q
    ||||||||||  |||||  |||||||||||| ||||||    
T  27224349 tctttgatgacggtttatcagatgatgatcccattaga 27224312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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