View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_2 (Length: 528)
Name: NF16181_low_2
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 4439286 - 4439787
Alignment:
| Q |
19 |
agtatagtatccaaacttcttcacctttttgccatcatctgaatacgttgttgcatcaaagaaaaaagaaatcactagaaaggcaagtgttcaaacgaca |
118 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4439286 |
agtatagtatccaaacttcttcacctttctgccatcatctgaatacgttgttgcatcaaagaaaaaagtaatcactagaaaggcaagtgttcaaacgaca |
4439385 |
T |
|
| Q |
119 |
atggcagagtcgaactccaaacaacgaaaagcattagaagaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439386 |
atggcagagtcgaactccaaacaacgaaaagcattagaagaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctcc |
4439485 |
T |
|
| Q |
219 |
ttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatgatgactccctctactc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4439486 |
ttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccgtgtgctagatttctatgatgactccctctactc |
4439585 |
T |
|
| Q |
319 |
tgataaccccatcgaactcaaaaagtttgtttttctggtgaccagggtgcttaccctccttcgtaatcctcgcggcattcggaagatgcgtctccactgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4439586 |
tgataaccccatcgaactcaaaaagtttgtttttctggtgaccggggtgcttaccctccttcctaatcctcgcggcattcggaagatgcgtctccactgt |
4439685 |
T |
|
| Q |
419 |
gctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggccttaccttgaggaactcgaccttcatc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4439686 |
gctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggccttaccttgaggaactcgaccttgatc |
4439785 |
T |
|
| Q |
519 |
tc |
520 |
Q |
| |
|
|| |
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|
| T |
4439786 |
tc |
4439787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 4414154 - 4414029
Alignment:
| Q |
118 |
aatggcagagtcgaactccaaacaacgaaaagcattagaagaag---aagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgc |
214 |
Q |
| |
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||||||||||||||||||||||| | |||| ||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
4414154 |
aatggcagagtcgaactccaaacgagaaaaaacatctgaagaagaagaagacaggatcagtaatttacccgacgatgtgcttaaccacatcctgtcatgc |
4414055 |
T |
|
| Q |
215 |
ctccttaccaaaaccgctgttaccac |
240 |
Q |
| |
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|||| ||||||||||| |||| |||| |
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|
| T |
4414054 |
ctccctaccaaaaccgttgttgccac |
4414029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 32850241 - 32850143
Alignment:
| Q |
156 |
aagaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctc |
254 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||||||||||| |||||||||||| ||| |||| ||| ||||||||| |
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|
| T |
32850241 |
aagaagaagataggatcagtaagttacctgacgatgtgctcaacaacatcttgtcatgcctccctaccaaaaccgcagttgccaccggccgtctgtctc |
32850143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 17467905 - 17468018
Alignment:
| Q |
161 |
gaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgat |
260 |
Q |
| |
|
|||||||| ||||||||||||||||||| | | || ||||||||||| ||| ||| | ||||||||||| ||||| || ||| |||| |||| ||||| |
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| T |
17467905 |
gaagacagaatcagtaatttaccagacggtttactgaaccacatcctatcactccttccaaccaaaaccgccgttacaacaggccgtctatctcgccgat |
17468004 |
T |
|
| Q |
261 |
ggcgacacctttgg |
274 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
17468005 |
ggcgccacctttgg |
17468018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 4453580 - 4453705
Alignment:
| Q |
158 |
gaagaagacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcacc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| ||| | |||| |||| | |||| ||| ||| |||||||| |||| |||| | |
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| T |
4453580 |
gaagaagacaggatcagtaatttaccagatggtctgctcaaccagatcttatcattactcccgatcaaagacgcagttgccactggccgtctatctcgtc |
4453679 |
T |
|
| Q |
258 |
gatggcgacacctttggcaacatctc |
283 |
Q |
| |
|
||||||| ||||| ||| | |||||| |
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|
| T |
4453680 |
gatggcgccacctctggaagcatctc |
4453705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 89 - 303
Target Start/End: Complemental strand, 8396741 - 8396524
Alignment:
| Q |
89 |
atcactagaaaggcaagtgttcaaacgacaatggcagagtcgaactccaaacaacgaaaagcattagaaga---agaagacaggatcagtaatttaccag |
185 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||||| || || |||| ||||||||||| ||||| ||| |||||||| |||| |||||||| |
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|
| T |
8396741 |
atcactacaatggcaagtgcccaaacaacaatggcagagtcaaattcaaaacgacgaaaagcatcggaagagaaagatgacaggattagtagtttaccag |
8396642 |
T |
|
| Q |
186 |
acgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggcgacacctttggcaacatctccg |
285 |
Q |
| |
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| ||||| ||||||||||||||||||| ||||| |||||||| |||| |||||||| |||| |||| |||||||| |||||||||| ||||||||| |
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| T |
8396641 |
aggatgtcctcaaccacatcctgtcatacctcccgaccaaaactattgtttccactggccgtctttctcgccgatggcaacacctttggaaacatctcca |
8396542 |
T |
|
| Q |
286 |
tgtgctagatttctatga |
303 |
Q |
| |
|
|||||||||||||||||| |
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| T |
8396541 |
tgtgctagatttctatga |
8396524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 303
Target Start/End: Complemental strand, 8369356 - 8369217
Alignment:
| Q |
164 |
gacaggatcagtaatttaccagacgatgtgctcaaccacatcctgtcatgcctccttaccaaaaccgctgttaccactggctgtctgtctcaccgatggc |
263 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| | | |||||| ||||| |||| ||| |||| |||| || |||| |
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|
| T |
8369356 |
gacaggatcagtagtttaccagacgatgtcctcaaccacatcctgtcataccttccgatcaaaactactgttgccaccggccgtctatctcgccagtggc |
8369257 |
T |
|
| Q |
264 |
gacacctttggcaacatctccgtgtgctagatttctatga |
303 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||| |
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|
| T |
8369256 |
aacacctttggaaacatctccatgtgctagatttcaatga |
8369217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 513
Target Start/End: Complemental strand, 8396460 - 8396321
Alignment:
| Q |
374 |
ctccttcgtaatcctcgcggcattcggaagatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttggg |
473 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||| | || | |||| |||||| ||||| |
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|
| T |
8396460 |
ctcctacgtaatcccagcggcattcggaagatgcgtcttaactgtgctcactccattatcaacgacaacaatttacgtgcccgttcagttgacagttggg |
8396361 |
T |
|
| Q |
474 |
tttgtcctgtcattgggccttaccttgaggaactcgacct |
513 |
Q |
| |
|
|| || |||||||||||| |||| |||||||||||||| |
|
|
| T |
8396360 |
ttcgtgtcgtcattgggcctcacctcgaggaactcgacct |
8396321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 510
Target Start/End: Complemental strand, 8369125 - 8369007
Alignment:
| Q |
392 |
ggcattcggaagatgcgtctccactgtgctcattccgttatcaacgacgacaattttcatgatcattcacttgacacttgggtttgtcctgtcattgggc |
491 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||| || || | ||||||||||| | | ||| || |||||||||||||| || |||||||||||| |
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|
| T |
8369125 |
ggcattcggaaaatgcgtcttacctgtgctcactcccttgtcgatgacgacaatttccgttcccatacagttgacacttgggttcgttctgtcattgggc |
8369026 |
T |
|
| Q |
492 |
cttaccttgaggaactcga |
510 |
Q |
| |
|
|| | || ||||||||||| |
|
|
| T |
8369025 |
ctcaactcgaggaactcga |
8369007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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