View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_3 (Length: 501)
Name: NF16181_low_3
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 113 - 494
Target Start/End: Original strand, 15926225 - 15926606
Alignment:
| Q |
113 |
ggtagaaaatttatatctggttatggttatcctattaagggtggaaaaa-atcttatcttttcacatcgcggtaaaagaattcgatgtgaaatat-tttt |
210 |
Q |
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| T |
15926225 |
ggtagaaaatttatatctggttatggttatcctattaagggtggaaaaatatcttatcttttcacatcgcggtaaaagaattcgatgtgaaatatgtttt |
15926324 |
T |
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| Q |
211 |
tcacatcaagcgtttaccggatttgcaaagttaatccattattacacaagttaaaactatacaccgatgtgaaaacagtttttcacattgtgtgttcaac |
310 |
Q |
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| T |
15926325 |
tcacatcaagtgtttacgggatttgcaaagttaatccgttattacacaagttaaaacta--caccaatgtgaaaacagtttttcacattgagtgttcaac |
15926422 |
T |
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| Q |
311 |
gatcgggcaaaataccaagatacatcacctatattcacatcggttaaagaattgatgtgaaatgtgcattaaatagatgtaaaaaatctattatgcacta |
410 |
Q |
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| T |
15926423 |
aactaggcaaagtaccaagatacatcacctatgttcacatcggttaaagaattgatgtgaaatgtgcattaaatagatgtaaaaagtctattatgcacca |
15926522 |
T |
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| Q |
411 |
gtgtcctttgatttatttttcccatactgatagaaattttataaaaagtaacttataattttttgcgatataatactaactaca |
494 |
Q |
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| T |
15926523 |
atgtcctttgatttatttttcccatactgatagaaattttataaaaagtaactcatatttttttccgatataatattaactaca |
15926606 |
T |
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