View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16181_low_4 (Length: 487)
Name: NF16181_low_4
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 55 - 485
Target Start/End: Original strand, 49694545 - 49694966
Alignment:
| Q |
55 |
tccaataagttgttggcattagaagtttcttccaccgtatcaatggtttcagtgttttccacttgcaagttactttccattacattatcagtctcaatta |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694545 |
tccaataagttgttggcattagaagtttcttccaccgtatcagtggtttc---------cacttgcaagttactttccattacattatcagtctcaatta |
49694635 |
T |
|
| Q |
155 |
actcaaccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694636 |
actcatccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
49694735 |
T |
|
| Q |
255 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctattcttattccaataccttctcca |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49694736 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctactcttattccaataccttctcca |
49694835 |
T |
|
| Q |
355 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694836 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacat |
49694935 |
T |
|
| Q |
455 |
tcatgatttcaccaccatattcttcgacatc |
485 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |
|
|
| T |
49694936 |
tcatgatttcaccaccatcttcttcgtcatc |
49694966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University