View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_6 (Length: 381)
Name: NF16181_low_6
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 47075708 - 47075349
Alignment:
| Q |
17 |
tctctttagtgtgatcaccattaatttcattcagtaataaaattatgcatacatataacgttacaaatacacatttcaatgaaataaacacacatgtagc |
116 |
Q |
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| T |
47075708 |
tctctttagtgtgatcaccattaatttcattcagtaataaaattatgcatacatataacgttacaaatacacatttcaatgaaataaacacacatgtagc |
47075609 |
T |
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| Q |
117 |
tggtcagcataattatagttgcttgctaactctgttgcatacagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgt |
216 |
Q |
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| T |
47075608 |
tggtcagcataattatagttgcttgctaactctgttgcatccagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgt |
47075509 |
T |
|
| Q |
217 |
ggttaacagatagtgaccaaaccaagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075508 |
ggttaacagatagtgaccaaaccaagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattc |
47075409 |
T |
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| Q |
317 |
atgctgaggagactgttgctgcaaggagtgctgttgagattatcttccgttcatctcact |
376 |
Q |
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| T |
47075408 |
atgctgaggagactgttgctgcaaggagtgctgttgagattatcttccgttgttctcact |
47075349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 367
Target Start/End: Complemental strand, 47057921 - 47057720
Alignment:
| Q |
161 |
aattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagcttaactgtaaa |
260 |
Q |
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| T |
47057921 |
aattaagattatggactttgtgtgacattagtgtctct---gtttgtgtgtgctatgg--aacagatagtgaccaaaccaagccgaagcttaaccttaaa |
47057827 |
T |
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| Q |
261 |
gcttcaaaacaaaagag-ggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgcaaggagtgctgttgagattat |
359 |
Q |
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| T |
47057826 |
gcttcaaagctacaaagaggatca-tgttcgaagaaatcttggaattattaccattcttgctgaagagactgttgcttcaaggagtgctgttgagattat |
47057728 |
T |
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| Q |
360 |
cttccgtt |
367 |
Q |
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|||||||| |
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| T |
47057727 |
cttccgtt |
47057720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 18229862 - 18230006
Alignment:
| Q |
221 |
aacagatagtgaccaaaccaagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgc |
320 |
Q |
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||||||| |||||||||| |||| |||||||||| ||| ||||||||||||| |||||| || | |||||| ||| |||||||||||||||||||| || |
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| T |
18229862 |
aacagattgtgaccaaacaaagcaggagcttaaccataaggcttcaaaacaaaggagggaatattagtcaaataaatcaaggggcaattaccattcacgc |
18229961 |
T |
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| Q |
321 |
tgaggagactgttgctgcaaggagtgctgttgagattatcttccg |
365 |
Q |
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|||||| || |||||||||| || ||||||||| ||||||||||| |
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| T |
18229962 |
tgaggaaacagttgctgcaaagaatgctgttgatattatcttccg |
18230006 |
T |
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