View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_7 (Length: 342)
Name: NF16181_low_7
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 42909875 - 42909546
Alignment:
| Q |
1 |
tttcttttttatctgtcattttgaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgtaaactattttcttattagcagggaaag |
100 |
Q |
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| T |
42909875 |
tttcttttttatctgtcattttgaaattgcgtggttacattgagtaaaagcacatatattaattaagtagtgttaactattttcttattagcagggaaag |
42909776 |
T |
|
| Q |
101 |
taactaatctcgtcgtgatacctcggtctccagcattctccgcatcgaataacacgagagagctcaaacgatatattgtttctccattggataagtgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42909775 |
taactaatctcgtcgtgatacctcggtctccagcattctccgcatcgaataacacgagagagctcaaacgatatatcgtttctccattggataagtgtcc |
42909676 |
T |
|
| Q |
201 |
tctgcagatcagcagatacaaggaaactaccactcttctttctttgtgtcgcctcttcaaagaaaaacaaacttacattgatttaagaagcactggttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42909675 |
tctgcagatcagcagatacaaggaaactaccactcttctttctttgtgtcgcctcttcaaagaaaaacaaacttacattgatttaagaagcactggttta |
42909576 |
T |
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| Q |
301 |
ttgagacaaaatatgtttggttcacaggtt |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42909575 |
ttgagacaaaatatgtttggttcacaggtt |
42909546 |
T |
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