View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16181_low_9 (Length: 323)
Name: NF16181_low_9
Description: NF16181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16181_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 22770270 - 22769966
Alignment:
| Q |
1 |
tcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaacttgttatcatggctattgtcatagccatgattgcatacatagaagt |
100 |
Q |
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| T |
22770270 |
tcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaacttgttatcatggctattatcatagccatgattgcatacatagaagt |
22770171 |
T |
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| Q |
101 |
taacagtgttaatgctgaagtttggcttattcttaattgactctaattcagaggagtttaggccatagatgataactgaattgttcataaaactgatgct |
200 |
Q |
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| T |
22770170 |
taacagtgttaatgctgaagtttggcttattctttattggctctaattcagaggagtttaggccatagatgatagctgaattgttcatataactgatgct |
22770071 |
T |
|
| Q |
201 |
atcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattctcgtttatcgacggtg |
300 |
Q |
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| T |
22770070 |
atcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattctcgtttatcgacggtg |
22769971 |
T |
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| Q |
301 |
gtaaa |
305 |
Q |
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||||| |
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| T |
22769970 |
gtaaa |
22769966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 22781559 - 22781364
Alignment:
| Q |
96 |
gaagttaacagtgttaatgctgaagtttggcttattcttaattgactctaa------ttcagaggagtttaggccatagatgataactgaattgttcata |
189 |
Q |
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|||||||| ||||||||||||||| ||||| ||||||||| ||| ||||| || | |||||| ||| ||||||||||| ||||||||||||| |
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| T |
22781559 |
gaagttaatagtgttaatgctgaatattggcctattcttaaatgattctaaatttaatttatgagagtttgggctatagatgataattgaattgttcata |
22781460 |
T |
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| Q |
190 |
aaactgatgctatcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattct |
285 |
Q |
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| T |
22781459 |
taatacatgctatcaattatataggtttggtctctgagttgaattgttttcactaaactgctgttgtcacaaccagatatgtaatagccacattct |
22781364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22781642 - 22781589
Alignment:
| Q |
1 |
tcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaac |
54 |
Q |
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|||||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||| |
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| T |
22781642 |
tcaggtatagaagtgaagtagatatcgtaatcggaacagtttctatatttgaac |
22781589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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