View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_high_1 (Length: 674)
Name: NF16182_high_1
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 168 - 665
Target Start/End: Original strand, 21400498 - 21400995
Alignment:
| Q |
168 |
ttaccagttttaggctctgtgacttctgaaattgaacatttaattgccttattgttccttgaagcaattcgaagagttggtttggaagaagataagggaa |
267 |
Q |
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| T |
21400498 |
ttaccagttttcggctctgtgacttctgaaattgaacatttaattgccttattgttccttgaagcaattcgaagagttggtttggaagaagataagggaa |
21400597 |
T |
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| Q |
268 |
gtccaaagagattgttacgtttattgaagaaaagtggagaagaagagtttttctttggaaatgttgttgaagagaataatagagagttttgaacagtaag |
367 |
Q |
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| T |
21400598 |
gtccaaagagcttgttacgtttattgaagaaaaatggagaagaagagtttttctttggaaatgttgttgaagagaataatagagagttttgaacagtaag |
21400697 |
T |
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| Q |
368 |
tgccattttctccatttcccttaactcactcactctctgtgtaaagtgttacacagaaaagagagaaagaaagatgagggatattggagaaatgaatatg |
467 |
Q |
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| T |
21400698 |
tgccattttctccatttcccttaactcactcactctctgtgtaaagtgttacacagaaaagagagaaagaaagatgagggatattggagaaatgaatatg |
21400797 |
T |
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| Q |
468 |
tgaggctatggattgatattcttcttgtatatatcgttgagtttgtttcaagtgaaattaaattaaatactagtggtacacgaatggatacgatactcta |
567 |
Q |
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| T |
21400798 |
tgaggctatggattgatattcttcttgtatatatcgttgagtttgtttcaagtgaaattaaattaaatactagtggtacacgaatggatacgatactgta |
21400897 |
T |
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| Q |
568 |
ctttgtagtgtgtgggagtaattaatcaactaggttttcatatacggtttagtttcttccacatcatctaaggtttcttaccactgctatgatgatgt |
665 |
Q |
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| T |
21400898 |
ctttgtgttgtgtgggagtaattaatcaactaggttttgatatacggtttagtttcttccacatcatctaaggtttcttaccactactatgatgatgt |
21400995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 21400348 - 21400424
Alignment:
| Q |
18 |
ttaccatgatcaacatgagcaacaattgcaatatttctaatatctgctcttctcatcaatttcttcttctcctctga |
94 |
Q |
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| T |
21400348 |
ttaccatgatcaacatgagcaacaattgcaatatttctaatatctgctcttctcatcaatttcttcttctcctctga |
21400424 |
T |
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