View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16182_high_15 (Length: 242)

Name: NF16182_high_15
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16182_high_15
NF16182_high_15
[»] chr2 (34 HSPs)
chr2 (129-242)||(19343941-19344054)
chr2 (1-49)||(11163402-11163450)
chr2 (1-49)||(16099403-16099451)
chr2 (1-49)||(3555251-3555299)
chr2 (1-49)||(6657879-6657927)
chr2 (1-49)||(6658226-6658274)
chr2 (1-49)||(34448174-34448222)
chr2 (1-49)||(36755467-36755515)
chr2 (1-49)||(39498658-39498706)
chr2 (1-49)||(44044115-44044163)
chr2 (1-49)||(44045381-44045429)
chr2 (1-49)||(45556113-45556161)
chr2 (1-49)||(45556426-45556474)
chr2 (2-49)||(39423895-39423942)
chr2 (1-47)||(6588686-6588732)
chr2 (1-49)||(2318889-2318937)
chr2 (1-49)||(9076446-9076494)
chr2 (1-49)||(10713102-10713150)
chr2 (1-49)||(15848089-15848137)
chr2 (1-49)||(15848467-15848515)
chr2 (1-49)||(16099056-16099104)
chr2 (1-49)||(25230103-25230151)
chr2 (1-49)||(25231227-25231275)
chr2 (1-49)||(36382506-36382554)
chr2 (1-49)||(37895348-37895396)
chr2 (1-48)||(36480097-36480144)
chr2 (3-49)||(22051374-22051420)
chr2 (1-43)||(39498317-39498359)
chr2 (1-49)||(2318160-2318207)
chr2 (1-49)||(11163055-11163103)
chr2 (1-49)||(30729622-30729670)
chr2 (1-49)||(34447814-34447862)
chr2 (1-49)||(36382162-36382210)
chr2 (1-48)||(36479719-36479767)
[»] scaffold0020 (2 HSPs)
scaffold0020 (1-47)||(140020-140066)
scaffold0020 (1-47)||(139675-139721)
[»] chr4 (58 HSPs)
chr4 (1-50)||(49879207-49879256)
chr4 (1-49)||(7451835-7451883)
chr4 (1-49)||(7452182-7452230)
chr4 (1-49)||(10780714-10780762)
chr4 (1-49)||(10781863-10781911)
chr4 (1-49)||(10974323-10974371)
chr4 (1-49)||(13058038-13058086)
chr4 (1-49)||(23613310-23613358)
chr4 (1-49)||(24349675-24349723)
chr4 (1-49)||(24350811-24350859)
chr4 (1-49)||(24711112-24711160)
chr4 (1-49)||(24711459-24711507)
chr4 (1-49)||(48528486-48528534)
chr4 (1-49)||(50418669-50418717)
chr4 (1-49)||(50419016-50419064)
chr4 (2-49)||(23613658-23613705)
chr4 (1-48)||(44967071-44967118)
chr4 (1-47)||(37248584-37248630)
chr4 (1-49)||(5368948-5368996)
chr4 (1-49)||(13058361-13058409)
chr4 (1-49)||(18831350-18831398)
chr4 (1-49)||(18831696-18831744)
chr4 (1-49)||(34765759-34765807)
chr4 (1-49)||(44967417-44967465)
chr4 (1-49)||(46661293-46661341)
chr4 (1-49)||(51692898-51692946)
chr4 (1-49)||(55867493-55867541)
chr4 (1-48)||(16006172-16006219)
chr4 (1-48)||(37248238-37248285)
chr4 (2-48)||(15508052-15508098)
chr4 (1-47)||(35028001-35028047)
chr4 (1-47)||(43155532-43155578)
chr4 (1-47)||(54086698-54086744)
chr4 (1-49)||(148134-148182)
chr4 (1-49)||(1179179-1179227)
chr4 (1-49)||(14801737-14801785)
chr4 (1-49)||(15507674-15507722)
chr4 (1-49)||(17355926-17355974)
chr4 (1-49)||(35028377-35028425)
chr4 (1-49)||(36008845-36008893)
chr4 (1-49)||(39539297-39539345)
chr4 (1-49)||(43155875-43155923)
chr4 (1-49)||(53702177-53702225)
chr4 (1-48)||(24411360-24411407)
chr4 (2-49)||(24411728-24411775)
chr4 (2-49)||(51692554-51692601)
chr4 (2-49)||(53129886-53129933)
chr4 (3-49)||(35508621-35508667)
chr4 (2-48)||(53701814-53701860)
chr4 (2-47)||(11108220-11108265)
chr4 (4-49)||(34765381-34765426)
chr4 (1-49)||(36009192-36009241)
chr4 (5-42)||(49879559-49879596)
chr4 (1-49)||(147320-147368)
chr4 (1-49)||(1178058-1178106)
chr4 (1-49)||(5369246-5369294)
chr4 (1-49)||(52909254-52909302)
chr4 (1-49)||(55866112-55866160)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-49)||(2120-2168)
scaffold0007 (1-49)||(1770-1818)
[»] chr8 (39 HSPs)
chr8 (1-49)||(8316967-8317015)
chr8 (1-49)||(12198951-12198999)
chr8 (1-49)||(12443379-12443427)
chr8 (1-49)||(20385569-20385617)
chr8 (1-49)||(20386809-20386857)
chr8 (1-49)||(23663893-23663941)
chr8 (1-49)||(38956051-38956099)
chr8 (1-47)||(1425056-1425102)
chr8 (1-47)||(12273232-12273278)
chr8 (3-49)||(40318345-40318391)
chr8 (1-49)||(4406039-4406087)
chr8 (1-49)||(16388584-16388632)
chr8 (1-49)||(23698623-23698671)
chr8 (1-49)||(39071677-39071725)
chr8 (1-48)||(12272920-12272967)
chr8 (2-49)||(33357499-33357546)
chr8 (1-47)||(38862942-38862988)
chr8 (1-50)||(30712095-30712144)
chr8 (1-50)||(30719872-30719921)
chr8 (3-48)||(40317966-40318011)
chr8 (1-49)||(4995035-4995083)
chr8 (1-49)||(7306400-7306448)
chr8 (1-49)||(7313384-7313432)
chr8 (1-49)||(8316654-8316702)
chr8 (1-49)||(13186061-13186109)
chr8 (1-49)||(13186438-13186486)
chr8 (1-49)||(16388905-16388953)
chr8 (1-49)||(22915737-22915785)
chr8 (1-49)||(23663546-23663594)
chr8 (1-49)||(34685636-34685684)
chr8 (1-49)||(38955704-38955752)
chr8 (2-49)||(4994658-4994705)
chr8 (2-49)||(9065750-9065797)
chr8 (3-49)||(23698309-23698356)
chr8 (6-47)||(30710859-30710900)
chr8 (1-49)||(1425400-1425448)
chr8 (1-49)||(31608892-31608940)
chr8 (1-49)||(39072020-39072068)
chr8 (1-49)||(42803597-42803645)
[»] chr7 (42 HSPs)
chr7 (1-49)||(6253472-6253520)
chr7 (1-49)||(6253819-6253867)
chr7 (1-49)||(6571014-6571062)
chr7 (1-49)||(10936173-10936221)
chr7 (1-49)||(17102021-17102069)
chr7 (1-49)||(17102368-17102416)
chr7 (1-47)||(27992087-27992133)
chr7 (1-47)||(42019976-42020022)
chr7 (1-49)||(5457286-5457334)
chr7 (1-49)||(19204490-19204538)
chr7 (1-49)||(22871656-22871704)
chr7 (1-49)||(24389164-24389212)
chr7 (1-49)||(27396974-27397022)
chr7 (1-49)||(28469011-28469059)
chr7 (1-49)||(28469387-28469435)
chr7 (5-49)||(32298778-32298822)
chr7 (1-49)||(32299084-32299132)
chr7 (1-49)||(45010983-45011031)
chr7 (2-49)||(27991740-27991787)
chr7 (1-50)||(34799537-34799586)
chr7 (1-50)||(42019597-42019646)
chr7 (1-49)||(2640179-2640227)
chr7 (1-49)||(10935795-10935843)
chr7 (1-49)||(13386126-13386174)
chr7 (5-49)||(18670246-18670290)
chr7 (1-45)||(40379774-40379818)
chr7 (1-49)||(40380063-40380111)
chr7 (1-49)||(42362451-42362499)
chr7 (1-49)||(42731420-42731468)
chr7 (1-49)||(48788804-48788852)
chr7 (1-48)||(19204837-19204884)
chr7 (1-48)||(24388821-24388868)
chr7 (2-49)||(29141556-29141603)
chr7 (2-49)||(37657217-37657264)
chr7 (2-49)||(42731799-42731846)
chr7 (3-49)||(28105502-28105548)
chr7 (1-49)||(20426709-20426757)
chr7 (1-49)||(23181373-23181421)
chr7 (1-49)||(27396630-27396678)
chr7 (1-49)||(29144361-29144409)
chr7 (1-49)||(34793905-34793953)
chr7 (1-49)||(43123176-43123224)
[»] chr6 (23 HSPs)
chr6 (1-49)||(681107-681155)
chr6 (1-49)||(17734197-17734245)
chr6 (1-49)||(30337450-30337498)
chr6 (1-49)||(679867-679915)
chr6 (1-49)||(3059635-3059683)
chr6 (1-49)||(13379861-13379909)
chr6 (1-49)||(26463180-26463228)
chr6 (1-49)||(30337797-30337845)
chr6 (1-49)||(30726138-30726186)
chr6 (1-49)||(33517913-33517961)
chr6 (1-49)||(33647330-33647378)
chr6 (2-47)||(30804241-30804286)
chr6 (1-49)||(8090306-8090354)
chr6 (1-49)||(12408550-12408598)
chr6 (1-49)||(20651011-20651059)
chr6 (1-49)||(21628092-21628140)
chr6 (1-48)||(11434804-11434851)
chr6 (2-49)||(17734543-17734590)
chr6 (2-48)||(12080638-12080684)
chr6 (3-49)||(12081017-12081063)
chr6 (1-47)||(22617886-22617932)
chr6 (1-49)||(15115340-15115388)
chr6 (1-49)||(15116611-15116659)
[»] chr5 (57 HSPs)
chr5 (1-49)||(3528874-3528922)
chr5 (1-49)||(3529221-3529269)
chr5 (1-49)||(11761750-11761798)
chr5 (1-49)||(11762096-11762144)
chr5 (1-49)||(24547178-24547226)
chr5 (1-49)||(24547504-24547552)
chr5 (1-49)||(27587149-27587197)
chr5 (1-49)||(27587494-27587542)
chr5 (1-49)||(28770870-28770918)
chr5 (3-49)||(32242622-32242668)
chr5 (1-49)||(5993890-5993938)
chr5 (1-49)||(6150455-6150503)
chr5 (1-49)||(14194424-14194472)
chr5 (1-49)||(16157234-16157282)
chr5 (1-49)||(18247087-18247135)
chr5 (1-49)||(20814514-20814562)
chr5 (1-49)||(20840534-20840582)
chr5 (1-49)||(28771217-28771265)
chr5 (2-49)||(5024020-5024067)
chr5 (3-50)||(19517988-19518035)
chr5 (1-48)||(19892310-19892357)
chr5 (1-48)||(35512493-35512540)
chr5 (1-48)||(39453302-39453349)
chr5 (1-47)||(5024397-5024443)
chr5 (1-47)||(5835805-5835851)
chr5 (3-49)||(6150801-6150847)
chr5 (4-50)||(38442449-38442495)
chr5 (1-47)||(43159193-43159239)
chr5 (2-47)||(11740690-11740735)
chr5 (3-48)||(16082979-16083024)
chr5 (4-49)||(17202781-17202826)
chr5 (2-47)||(32242245-32242290)
chr5 (1-49)||(186798-186846)
chr5 (1-45)||(8322783-8322827)
chr5 (1-49)||(13962865-13962913)
chr5 (1-49)||(16156856-16156904)
chr5 (1-49)||(18247455-18247503)
chr5 (1-49)||(18670203-18670251)
chr5 (1-49)||(20840816-20840864)
chr5 (1-49)||(28269423-28269471)
chr5 (1-49)||(38475378-38475426)
chr5 (1-49)||(39453678-39453726)
chr5 (1-49)||(42265736-42265784)
chr5 (1-48)||(19892687-19892734)
chr5 (1-47)||(11047815-11047861)
chr5 (1-47)||(13362607-13362653)
chr5 (1-47)||(21257540-21257586)
chr5 (1-47)||(35512151-35512197)
chr5 (2-47)||(27937379-27937424)
chr5 (1-49)||(16083322-16083370)
chr5 (1-49)||(17202400-17202448)
chr5 (1-49)||(20814137-20814185)
chr5 (1-49)||(21265521-21265569)
chr5 (1-49)||(29646363-29646411)
chr5 (1-49)||(35920563-35920611)
chr5 (1-49)||(37991200-37991248)
chr5 (4-48)||(37992670-37992714)
[»] chr3 (29 HSPs)
chr3 (1-49)||(2796476-2796524)
chr3 (1-49)||(19741271-19741319)
chr3 (1-49)||(34142597-34142645)
chr3 (1-50)||(51994265-51994314)
chr3 (1-49)||(2796180-2796228)
chr3 (1-49)||(9294337-9294385)
chr3 (1-49)||(33689383-33689431)
chr3 (1-49)||(40033835-40033883)
chr3 (1-49)||(40758148-40758196)
chr3 (1-47)||(36150530-36150576)
chr3 (1-49)||(3850506-3850554)
chr3 (1-49)||(23458358-23458406)
chr3 (1-49)||(33689758-33689806)
chr3 (1-49)||(36418067-36418115)
chr3 (1-49)||(40758489-40758537)
chr3 (1-49)||(42342792-42342840)
chr3 (1-49)||(51993965-51994013)
chr3 (1-49)||(55052627-55052674)
chr3 (1-48)||(9292245-9292292)
chr3 (1-47)||(46474818-46474864)
chr3 (2-47)||(26463635-26463680)
chr3 (2-47)||(46475160-46475205)
chr3 (2-47)||(53756747-53756792)
chr3 (1-49)||(19740924-19740972)
chr3 (1-49)||(26463965-26464013)
chr3 (1-49)||(35712045-35712093)
chr3 (1-49)||(41558009-41558057)
chr3 (1-49)||(53856016-53856064)
chr3 (1-49)||(53856436-53856484)
[»] chr1 (53 HSPs)
chr1 (1-49)||(25647885-25647933)
chr1 (1-49)||(26024771-26024819)
chr1 (1-49)||(34464828-34464876)
chr1 (2-49)||(19017630-19017677)
chr1 (2-49)||(30711328-30711375)
chr1 (1-50)||(13914446-13914495)
chr1 (1-49)||(183222-183270)
chr1 (1-49)||(6367563-6367611)
chr1 (1-49)||(17661853-17661901)
chr1 (1-49)||(19515820-19515868)
chr1 (1-49)||(23209706-23209754)
chr1 (1-49)||(24009576-24009624)
chr1 (1-49)||(26024424-26024472)
chr1 (1-49)||(30711706-30711754)
chr1 (1-49)||(34464450-34464498)
chr1 (1-49)||(34850444-34850492)
chr1 (1-49)||(35473632-35473680)
chr1 (1-49)||(36694283-36694331)
chr1 (1-49)||(36694627-36694675)
chr1 (1-49)||(36710384-36710432)
chr1 (1-49)||(36710728-36710776)
chr1 (1-49)||(47999124-47999172)
chr1 (1-49)||(47999471-47999519)
chr1 (3-50)||(35152711-35152758)
chr1 (1-47)||(37578195-37578241)
chr1 (1-47)||(40435348-40435394)
chr1 (4-49)||(43759204-43759249)
chr1 (2-50)||(4960540-4960588)
chr1 (1-49)||(5734011-5734059)
chr1 (1-49)||(6367941-6367989)
chr1 (1-49)||(17662229-17662277)
chr1 (1-49)||(34849012-34849060)
chr1 (1-49)||(35152344-35152392)
chr1 (1-49)||(37578571-37578619)
chr1 (1-49)||(40772508-40772556)
chr1 (1-49)||(41098734-41098782)
chr1 (3-47)||(42533027-42533071)
chr1 (1-49)||(46899062-46899110)
chr1 (1-49)||(51015634-51015682)
chr1 (1-49)||(51019728-51019776)
chr1 (4-47)||(17692567-17692610)
chr1 (1-48)||(42248475-42248522)
chr1 (3-49)||(6518177-6518223)
chr1 (3-49)||(13914069-13914115)
chr1 (1-43)||(49723105-49723147)
chr1 (1-49)||(183570-183619)
chr1 (4-49)||(40772841-40772886)
chr1 (1-49)||(13300283-13300331)
chr1 (1-41)||(14878980-14879020)
chr1 (1-49)||(19018008-19018056)
chr1 (2-64)||(26234430-26234489)
chr1 (1-49)||(32917639-32917687)
chr1 (2-50)||(48692394-48692442)
[»] scaffold0707 (1 HSPs)
scaffold0707 (1-49)||(6458-6506)
[»] scaffold0075 (1 HSPs)
scaffold0075 (1-49)||(14769-14817)
[»] scaffold0031 (2 HSPs)
scaffold0031 (1-49)||(68966-69014)
scaffold0031 (1-49)||(69344-69392)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-49)||(37942-37990)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 19344054 - 19343941
Alignment:
Q  129 atataccatacgatcctaagttcagaatatcagatgaacataactagaagatgtgtgattcttagtcagatgataagaccaacggataaactcaattaaa 228  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19344054 atataccatacggtcctaagttcagaatatcagatgaacataactagaagatgtgtgattctgagtcagatgataagaccaacggataaactcaattaaa 19343955  T
Q  229 cgtaagttcatttc 242  Q
    ||||||||||||||    
T  19343954 cgtaagttcatttc 19343941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11163402 - 11163450
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  11163402 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 11163450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16099403 - 16099451
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16099403 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 16099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3555299 - 3555251
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  3555299 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 3555251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6657927 - 6657879
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  6657927 ccaatttttaaacgaccccaaattgcaaggatcaaatacatatttaagc 6657879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6658226 - 6658274
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  6658226 ccaatttttaaacgacctctaattgcaaggatcaaatacatatttaagc 6658274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34448174 - 34448222
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||    
T  34448174 ccaatttttaaacaacccctaattgcaaggatgaaatacatgtttaagc 34448222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36755467 - 36755515
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  36755467 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 36755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39498658 - 39498706
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  39498658 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaagc 39498706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44044163 - 44044115
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  44044163 ccaatttttaaaccacccctaattgcagggatcaaatacatatttaagc 44044115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44045381 - 44045429
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  44045381 ccaatttttaaacgacccctaattgcagggatcaaatacatatttaagc 44045429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45556161 - 45556113
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  45556161 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaagc 45556113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45556426 - 45556474
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  45556426 ccaatttttaaacgacccctaattacaaggatcaaatacatatttaagc 45556474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 39423895 - 39423942
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||    
T  39423895 caatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 39423942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6588732 - 6588686
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  6588732 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 6588686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2318889 - 2318937
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||    
T  2318889 ccaatttttaaacgacccctaattggaaggatgaaatacatatttaagc 2318937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9076446 - 9076494
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||    
T  9076446 ccaatttttaaacgacccctaattgcaagaataaaatacatatttaagc 9076494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10713102 - 10713150
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  10713102 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 10713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15848137 - 15848089
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || ||||||| |||||    
T  15848137 ccaatttttaaacgacccctaattgcaaggatgaaatacatatataagc 15848089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15848467 - 15848515
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || ||| |||||||||    
T  15848467 ccaatttttaaacgacccctaattgcaaggatgaaatacttatttaagc 15848515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16099104 - 16099056
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  ||||||||||||||| ||||| |||||||||||||    
T  16099104 ccaatttttaaatgacccctaattgcaagaatcaaatacatatttaagc 16099056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25230151 - 25230103
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  25230151 ccaatttttaaacgacccctaattgcagggattaaatacatatttaagc 25230103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25231227 - 25231275
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  25231227 ccaatttttaaacgacccctaattgcagggattaaatacatatttaagc 25231275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36382506 - 36382554
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  36382506 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 36382554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37895396 - 37895348
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  37895396 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 37895348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36480097 - 36480144
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  36480097 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaag 36480144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 22051374 - 22051420
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||||| ||||||||||| || || |||||||||||||    
T  22051374 aatttttaaacaacctctaattgcaagaatgaaatacatatttaagc 22051420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39498359 - 39498317
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatat 43  Q
    ||||||||||||| |||||||||| |||||||||| |||||||    
T  39498359 ccaatttttaaacgacccctaattacaaggatcaaatacatat 39498317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2318207 - 2318160
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  2318207 ccaatttttaaactaccc-taattgcaaggatgaaatacatatttaagc 2318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11163103 - 11163055
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||  ||||||||| |||||| |||||||||||||    
T  11163103 ccaatttttaaacgacctttaattgcaaagatcaaatacatatttaagc 11163055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30729670 - 30729622
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||  |||||||||||||| || |||||||||||||    
T  30729670 ccaatttttaaacgacgtctaattgcaaggatgaaatacatatttaagc 30729622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34447862 - 34447814
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||| ||||||| || |||||||||||||    
T  34447862 ccaatttttaaatgacccctaattacaaggatgaaatacatatttaagc 34447814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36382210 - 36382162
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | |||||||||||||||| || |||||| ||||||    
T  36382210 ccaatttttaaacgaaccctaattgcaaggatgaaatacatacttaagc 36382162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36479767 - 36479719
Alignment:
Q  1 ccaatttttaaacaacccctaattgc-aaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||| |||||| || ||||||||||||    
T  36479767 ccaatttttaaacgacccctaattgcaaaggatgaaatacatatttaag 36479719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 140020 - 140066
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  140020 ccaatttttaaacaacccctaattgcaaggatcaaatacatatttaa 140066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 139721 - 139675
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  139721 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaa 139675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 58)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49879256 - 49879207
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  49879256 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagct 49879207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7451883 - 7451835
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  7451883 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 7451835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7452182 - 7452230
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  7452182 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 7452230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10780762 - 10780714
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10780762 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 10780714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10781863 - 10781911
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10781863 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 10781911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10974371 - 10974323
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10974371 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 10974323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13058086 - 13058038
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  13058086 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 13058038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23613358 - 23613310
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  23613358 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 23613310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24349723 - 24349675
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  24349723 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 24349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24350811 - 24350859
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  24350811 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 24350859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24711160 - 24711112
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  24711160 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 24711112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24711459 - 24711507
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  24711459 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 24711507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48528534 - 48528486
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  48528534 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 48528486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50418717 - 50418669
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  50418717 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 50418669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50419016 - 50419064
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  50419016 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 50419064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 23613658 - 23613705
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  23613658 caatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44967118 - 44967071
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  44967118 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaag 44967071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37248584 - 37248630
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  37248584 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaa 37248630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5368996 - 5368948
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  5368996 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaagc 5368948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13058361 - 13058409
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||||    
T  13058361 ccaatttttaaacgaccccttattgcaaggatcaaatacatatttaagc 13058409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18831398 - 18831350
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  18831398 ccaatttttaaacgacccctaattgtaaggatcaaatacatatttaagc 18831350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18831696 - 18831744
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  18831696 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 18831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34765759 - 34765807
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  34765759 ccaatttttaaacgacccctaattgcaaggataaaatacatatttaagc 34765807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44967417 - 44967465
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  44967417 ccaatttttaaacgacctctaattgcaaggatcaaatacatatttaagc 44967465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46661293 - 46661341
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  46661293 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 46661341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51692898 - 51692946
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  51692898 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 51692946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55867493 - 55867541
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  55867493 ccaatttttaaacgacccctaattgcagggatcaaatacatatttaagc 55867541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16006172 - 16006219
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  16006172 ccaatttttaaacgacccctaattgcaagaatcaaatacatatttaag 16006219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37248285 - 37248238
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  37248285 ccaatttttaaacgacccctaattgcaaggttcaaatacatatttaag 37248238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 15508052 - 15508098
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||    
T  15508052 caatttttaaacgacccctaattgcaaggatgaaatacatatttaag 15508098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35028047 - 35028001
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  35028047 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 35028001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43155578 - 43155532
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  43155578 ccaatttttaaacgacccttaattgcaaggatcaaatacatatttaa 43155532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 54086744 - 54086698
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  54086744 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 54086698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 148134 - 148182
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  148134 ccaatttttaaacgacccctaattgcagggatgaaatacatatttaagc 148182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1179179 - 1179227
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||||||    
T  1179179 ccaatttttaaacgacccctaattgcaaagataaaatacatatttaagc 1179227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14801785 - 14801737
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||||    
T  14801785 ccaatttttaaacgactcctaattgcaaggatgaaatacatatttaagc 14801737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15507722 - 15507674
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  15507722 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 15507674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17355974 - 17355926
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||||    
T  17355974 ccaatttttaaacgactcctaattgcaaggatgaaatacatatttaagc 17355926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35028377 - 35028425
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  35028377 ccaatttttaaaatacccctaattgcaaggatgaaatacatatttaagc 35028425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36008893 - 36008845
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | |||||||| |||||||||| |||||||||||||    
T  36008893 ccaatttttaaacgatccctaattacaaggatcaaatacatatttaagc 36008845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39539297 - 39539345
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  39539297 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 39539345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43155875 - 43155923
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||  ||||||||| |||||||||||||    
T  43155875 ccaatttttaaacgacccctaattataaggatcaaatacatatttaagc 43155923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53702177 - 53702225
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||||    
T  53702177 ccaatttttaaacaacctctaattgcaaagatgaaatacatatttaagc 53702225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24411407 - 24411360
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  24411407 ccaatttttaaactacccctaattgctaggatgaaatacatatttaag 24411360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 24411728 - 24411775
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||    
T  24411728 caatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 24411775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 51692601 - 51692554
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| ||| |||||||||||||| || |||||||||||||    
T  51692601 caatttttaaacgacctctaattgcaaggatgaaatacatatttaagc 51692554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 53129886 - 53129933
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||||| ||||||||||| || |||||||||||||    
T  53129886 caatttttaaacgacccctgattgcaaggatgaaatacatatttaagc 53129933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 35508621 - 35508667
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||||||||||||| ||| || |||||||||||||    
T  35508621 aatttttaaacgacccctaattgcaatgataaaatacatatttaagc 35508667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 53701860 - 53701814
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    |||||||||||| |||||||||||||||||| || || |||||||||    
T  53701860 caatttttaaacgacccctaattgcaaggatgaaatagatatttaag 53701814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11108220 - 11108265
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| | |||||||||||||||| || |||||||||||    
T  11108220 caatttttaaacgatccctaattgcaaggatgaaatacatatttaa 11108265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34765426 - 34765381
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||    
T  34765426 atttttaaacgacccttaattgcaaggataaaatacatatttaagc 34765381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36009192 - 36009241
Alignment:
Q  1 ccaatttttaaacaacccc-taattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||||||||||    
T  36009192 ccaatttttaaacgaccccctaattacaaggatcaaatacatatttaagc 36009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 49879559 - 49879596
Alignment:
Q  5 tttttaaacaacccctaattgcaaggatcaagtacata 42  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  49879559 tttttaaacgacccctaattgcaaggatcaaatacata 49879596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 147368 - 147320
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| | |||| || |||||||||||||    
T  147368 ccaatttttaaacgacccctaattgtagggatgaaatacatatttaagc 147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1178106 - 1178058
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| |||||| ||||||| || |||||||||||||    
T  1178106 ccaatttttaaacgacctctaattacaaggatgaaatacatatttaagc 1178058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5369246 - 5369294
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||  ||||||||| |||||||||||||    
T  5369246 ccaatttttaaacgacccctacttataaggatcaaatacatatttaagc 5369294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52909302 - 52909254
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||| ||| |||||||||||||| ||| || |||||||||||||    
T  52909302 ccaatttttgaacgacccctaattgcaaagatgaaatacatatttaagc 52909254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55866160 - 55866112
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||  || |||||||||||||    
T  55866160 ccaatttttaaacgacccctaattgcagggacgaaatacatatttaagc 55866112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2120 - 2168
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  2120 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 2168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1818 - 1770
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  1818 ccaattttttaacgacccctaattgcaaggatcaaatacatatttaagc 1770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8316967 - 8317015
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  8316967 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 8317015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12198999 - 12198951
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  12198999 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 12198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12443427 - 12443379
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  12443427 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 12443379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20385617 - 20385569
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  20385617 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 20385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20386809 - 20386857
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  20386809 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 20386857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23663893 - 23663941
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  23663893 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 23663941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38956051 - 38956099
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  38956051 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 38956099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1425102 - 1425056
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  1425102 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaa 1425056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12273232 - 12273278
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  12273232 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaa 12273278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 40318345 - 40318391
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  40318345 aatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 40318391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4406039 - 4406087
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||    
T  4406039 ccaatttttaaacaacccctaattacaaggatgaaatacatatttaagc 4406087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16388632 - 16388584
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  16388632 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 16388584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23698623 - 23698671
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  23698623 ccaatttttaaacgacccctaattacaaggatcaaatacatatttaagc 23698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39071725 - 39071677
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  39071725 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 39071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12272967 - 12272920
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  12272967 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaag 12272920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 33357546 - 33357499
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||    
T  33357546 caatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 33357499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38862942 - 38862988
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  38862942 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 38862988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30712095 - 30712144
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    |||||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  30712095 ccaatttttaaacggcccctaatcgcaaggatcaaatacatatttaagct 30712144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30719872 - 30719921
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    |||||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  30719872 ccaatttttaaacggcccctaatcgcaaggatcaaatacatatttaagct 30719921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 40318011 - 40317966
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||    
T  40318011 aatttttaaacgacccctaattgcaaggatgaaatacatatttaag 40317966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4995035 - 4995083
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  4995035 ccaatttttaaatgacccctaattgcaaggatgaaatacatatttaagc 4995083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7306448 - 7306400
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  7306448 ccaatttttaaacgacccctatttgcagggatcaaatacatatttaagc 7306400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7313384 - 7313432
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  7313384 ccaatttttaaacgacccctatttgcagggatcaaatacatatttaagc 7313432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8316702 - 8316654
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||    
T  8316702 ccaatttttaaacgacccctaattgcaaggatgaaatgcatatttaagc 8316654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13186109 - 13186061
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | |||||||||||||||| || |||||||||||||    
T  13186109 ccaatttttaaacgatccctaattgcaaggatgaaatacatatttaagc 13186061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13186438 - 13186486
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||||    
T  13186438 ccaatttttaaacgacccctaattgcaaggatgaaatatatatttaagc 13186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16388905 - 16388953
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  16388905 ccaatttttaaatgacccctaattgcaaggatgaaatacatatttaagc 16388953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22915737 - 22915785
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||| ||||||||||||| |||||||||||||    
T  22915737 ccaatttttaaacgatccctagttgcaaggatcaaatacatatttaagc 22915785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23663594 - 23663546
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||    
T  23663594 ccaatttttaaacgacccctaattgcaaggatgaaatgcatatttaagc 23663546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34685636 - 34685684
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | |||||||||||||||| || |||||||||||||    
T  34685636 ccaatttttaaacgatccctaattgcaaggataaaatacatatttaagc 34685684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38955752 - 38955704
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||| ||||||||||||||| |||||||||||||    
T  38955752 ccaatttttaaacgatccccaattgcaaggatcaaatacatatttaagc 38955704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 4994705 - 4994658
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||| |||||||||||| ||| || |||||||||||||    
T  4994705 caatttttaaacaatccctaattgcaacgatgaaatacatatttaagc 4994658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 9065750 - 9065797
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||||||||||||||||||  | |||||||||||||    
T  9065750 caatttttaaataacccctaattgcaaggatggaatacatatttaagc 9065797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 23698356 - 23698309
Alignment:
Q  3 aatttttaaacaacccc-taattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  23698356 aatttttaaacgaccccctaattgcaaggatcaaatacatatttaagc 23698309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 30710900 - 30710859
Alignment:
Q  6 ttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||||||||| |||||| |||||||||||    
T  30710900 ttttaaacaacctctaattgcaaagatcaaatacatatttaa 30710859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1425400 - 1425448
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| |||||| |||||||||| || ||||||||||    
T  1425400 ccaatttttaaacgacctctaattacaaggatcaaatatatatttaagc 1425448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31608892 - 31608940
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || ||| |||||||||    
T  31608892 ccaatttttaaacgacccttaattgcaaggatgaaatacttatttaagc 31608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39072020 - 39072068
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| | ||||||||||| || |||||||||||||    
T  39072020 ccaatttttaaacgacccttgattgcaaggatgaaatacatatttaagc 39072068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42803597 - 42803645
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||  |||||||||||||| || |||||||||||||    
T  42803597 ccaatttttaaacgacttctaattgcaaggatgaaatacatatttaagc 42803645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6253520 - 6253472
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6253520 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 6253472  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6253819 - 6253867
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6253819 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 6253867  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6571062 - 6571014
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6571062 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 6571014  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10936173 - 10936221
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  10936173 ccaatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 10936221  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17102069 - 17102021
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  17102069 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 17102021  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17102368 - 17102416
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  17102368 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 17102416  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27992087 - 27992133
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  27992087 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaa 27992133  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42019976 - 42020022
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||||||||||||||||||||||| || |||||||||||    
T  42019976 ccaatttttaaacaacccctaattgcaaggatgaaatacatatttaa 42020022  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5457286 - 5457334
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  5457286 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 5457334  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19204538 - 19204490
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  19204538 ccaatttttaaacgacccctaatttcaaggatcaaatacatatttaagc 19204490  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22871656 - 22871704
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  22871656 ccaatttttaaatgacccctaattgcaaggatcaaatacatatttaagc 22871704  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24389164 - 24389212
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  24389164 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 24389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27396974 - 27397022
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  27396974 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 27397022  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28469059 - 28469011
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  28469059 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 28469011  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28469387 - 28469435
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  28469387 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 28469435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32298822 - 32298778
Alignment:
Q  5 tttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  32298822 tttttaaacgacccctaattgcaaggatcaaatacatatttaagc 32298778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32299084 - 32299132
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || |||||||||||||||||| |||||||||||||    
T  32299084 ccaatttttaaacgactcctaattgcaaggatcaaatacatatttaagc 32299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45010983 - 45011031
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  45010983 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 45011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 27991787 - 27991740
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  27991787 caatttctaaacgacccctaattgcaaggatcaaatacatatttaagc 27991740  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34799537 - 34799586
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||||| ||||||| ||||| ||||||| ||||||||||||||    
T  34799537 ccaatttttaaacgacccctatttgcagggatcaaatacatatttaagct 34799586  T

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Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42019646 - 42019597
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||||    
T  42019646 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagct 42019597  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2640227 - 2640179
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||    
T  2640227 ccaatttttaaacgacccctaattgtaaggatgaaatacatatttaagc 2640179  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10935843 - 10935795
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||| ||||||||    
T  10935843 ccaatttttaaacgacccctaattgcaaggatgaaatacacatttaagc 10935795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13386126 - 13386174
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||    
T  13386126 ccaatttttaaacgacccctaattgcaagtattaaatacatatttaagc 13386174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 18670246 - 18670290
Alignment:
Q  5 tttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||| |||||||||||||||||| || |||||||||||||    
T  18670246 tttttaaacgacccctaattgcaaggattaaatacatatttaagc 18670290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40379818 - 40379774
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatattt 45  Q
    ||||||||||||| |||||||||||||||||| || |||||||||    
T  40379818 ccaatttttaaacgacccctaattgcaaggatgaaatacatattt 40379774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40380063 - 40380111
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||||    
T  40380063 ccaatttttaaacgactcctaattgcaaggatgaaatacatatttaagc 40380111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42362499 - 42362451
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||||    
T  42362499 ccaatttttaaacgacacctaattgcaaggatgaaatacatatttaagc 42362451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42731468 - 42731420
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| |  |||||||||||||    
T  42731468 ccaatttttaaacgacccctaattgcaaggatgagatacatatttaagc 42731420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48788852 - 48788804
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||    
T  48788852 ccaatttttaaacgacccctaattgcaagaatgaaatacatatttaagc 48788804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19204837 - 19204884
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| ||||||||||| ||||||||| | ||||||||||    
T  19204837 ccaatttttaaaccacccctaattgtaaggatcaaattcatatttaag 19204884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24388868 - 24388821
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  24388868 ccaatttttaaacgacccataattgcaaggatgaaatacatatttaag 24388821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 29141556 - 29141603
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| ||| |||||||||||||| || |||||||||||||    
T  29141556 caatttttaaacgacctctaattgcaaggatgaaatacatatttaagc 29141603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 37657217 - 37657264
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| | |||||||||||||||| || |||||||||||||    
T  37657217 caatttttaaacgatccctaattgcaaggatgaaatacatatttaagc 37657264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 42731799 - 42731846
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||||||||| ||||||| || |||||||||||||    
T  42731799 caatttttaaacgacccctaattacaaggatgaaatacatatttaagc 42731846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 28105548 - 28105502
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||| ||||||||||||| || |||||||||||||    
T  28105548 aatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 28105502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20426709 - 20426757
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| ||||||||| |||| || |||||||||||||    
T  20426709 ccaatttttaaacgacctctaattgcagggatgaaatacatatttaagc 20426757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23181373 - 23181421
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||| ||||||| |||||||||||||| ||| || |||||||||||||    
T  23181373 ccaatatttaaacgacccctaattgcaatgatgaaatacatatttaagc 23181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27396678 - 27396630
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||  ||||||||| ||||||| || |||||||||||||    
T  27396678 ccaatttttaaacggcccctaattacaaggatgaaatacatatttaagc 27396630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29144361 - 29144409
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||  || |||||||||||||    
T  29144361 ccaatttttaaacgacccctaattgcagggacgaaatacatatttaagc 29144409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34793953 - 34793905
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||||| |||| || |||||||||||||    
T  34793953 ccaatttttaaacgacccctatttgcagggataaaatacatatttaagc 34793905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43123224 - 43123176
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||  || |||||||||||||    
T  43123224 ccaatttttaaacgacccctaattgcagggacgaaatacatatttaagc 43123176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 681107 - 681155
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  681107 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 681155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17734245 - 17734197
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  17734245 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 17734197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30337498 - 30337450
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30337498 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 30337450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 679915 - 679867
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  679915 ccaatttttaaacgacccttaattgcaaggatcaaatacatatttaagc 679867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3059635 - 3059683
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  3059635 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 3059683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13379861 - 13379909
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  13379861 ccaatttttaaacgacccctaattgcagggatcaaatacatatttaagc 13379909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26463228 - 26463180
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  26463228 ccaatttttaaacgacccctaattgcagggatcaaatacatatttaagc 26463180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30337797 - 30337845
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  30337797 ccaatttttaaatgacccctaattgcaaggatcaaatacatatttaagc 30337845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30726138 - 30726186
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  30726138 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 30726186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33517913 - 33517961
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  33517913 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 33517961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33647330 - 33647378
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  33647330 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 33647378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 30804241 - 30804286
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||||||||||||||||| || |||||||||||    
T  30804241 caatttttaaacgacccctaattgcaaggatgaaatacatatttaa 30804286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8090306 - 8090354
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||  | |||||||||||||    
T  8090306 ccaatttttaaacgacccctaattgcaaggatgtaatacatatttaagc 8090354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12408550 - 12408598
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||| |||||||||||||||||||| |||||| || |||||||||||||    
T  12408550 ccaacttttaaacaacccctaattgtaaggatgaaatacatatttaagc 12408598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20651059 - 20651011
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||| ||||||| |||||||||||||    
T  20651059 ccaatttttaaacgatccctaattgcagggatcaaatacatatttaagc 20651011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21628092 - 21628140
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| | |||||||||||||||||| || |||||||||||||    
T  21628092 ccaatttttaagcgacccctaattgcaaggatgaaatacatatttaagc 21628140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11434851 - 11434804
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  11434851 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaag 11434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 17734543 - 17734590
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||| |||||| ||||||||| |||||||||||||    
T  17734543 caatttttaaacgacccataattgtaaggatcaaatacatatttaagc 17734590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 12080684 - 12080638
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    |||||||||||| |||||||||||||||||| || |||| |||||||    
T  12080684 caatttttaaacgacccctaattgcaaggatgaaatacaaatttaag 12080638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 12081017 - 12081063
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| || ||||||||||||||| || |||||||||||||    
T  12081017 aatttttaaacgactcctaattgcaaggatgaaatacatatttaagc 12081063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22617932 - 22617886
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||    
T  22617932 ccaatttttaaacgactcctaattgcaaggatgaaatacatatttaa 22617886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15115388 - 15115340
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | | |||||||||||||| || |||||||||||||    
T  15115388 ccaatttttaaacgatctctaattgcaaggatgaaatacatatttaagc 15115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15116611 - 15116659
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||  || |||||||| ||||    
T  15116611 ccaatttttaaacgacccctaattgcaaggacgaaatacatattaaagc 15116659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 57)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3528922 - 3528874
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3528922 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 3528874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3529221 - 3529269
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3529221 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 3529269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11761798 - 11761750
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  11761798 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 11761750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11762096 - 11762144
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  11762096 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 11762144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24547226 - 24547178
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24547226 ccaattttttaacgacccctaattgcaaggatcaagtacatatttaagc 24547178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24547504 - 24547552
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  24547504 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 24547552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27587197 - 27587149
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  27587197 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 27587149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27587494 - 27587542
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  27587494 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 27587542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28770918 - 28770870
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  28770918 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 28770870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 32242622 - 32242668
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  32242622 aatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 32242668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5993938 - 5993890
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  5993938 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 5993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6150503 - 6150455
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  6150503 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 6150455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14194472 - 14194424
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  14194472 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 14194424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16157234 - 16157282
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  16157234 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 16157282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18247135 - 18247087
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  18247135 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 18247087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20814514 - 20814562
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  20814514 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 20814562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20840582 - 20840534
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  20840582 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 20840534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28771217 - 28771265
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  28771217 ccaatttttaaacgacccctaattacaaggatcaaatacatatttaagc 28771265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 5024067 - 5024020
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||    
T  5024067 caatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 5024020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 19517988 - 19518035
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||    
T  19517988 aatttttaaactacccctaattgcaaggatgaaatacatatttaagct 19518035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19892357 - 19892310
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||    
T  19892357 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaag 19892310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35512493 - 35512540
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||    
T  35512493 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaag 35512540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39453349 - 39453302
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||    
T  39453349 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaag 39453302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5024397 - 5024443
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  5024397 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 5024443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5835805 - 5835851
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||    
T  5835805 ccaatttttaaacaactcctaattgcaaggatgaaatacatatttaa 5835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6150801 - 6150847
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||    
T  6150801 aatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 6150847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 38442449 - 38442495
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||    
T  38442449 atttttaaacgacccctaattgcaaggatgaaatacatatttaagct 38442495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43159193 - 43159239
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  43159193 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 43159239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 11740735 - 11740690
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||||||||||||||||| || |||||||||||    
T  11740735 caatttttaaacgacccctaattgcaaggatgaaatacatatttaa 11740690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 16083024 - 16082979
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||    
T  16083024 aatttttaaacaacccctaattggaaggatgaaatacatatttaag 16082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 17202781 - 17202826
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||| |||||||||||||||||| || |||||||||||||    
T  17202781 atttttaaacgacccctaattgcaaggatgaaatacatatttaagc 17202826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 32242290 - 32242245
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||||||||||||||||| || |||||||||||    
T  32242290 caatttttaaacgacccctaattgcaaggatgaaatacatatttaa 32242245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 186798 - 186846
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| |||||||||||||| || |||||||||||||    
T  186798 ccaatttttaaacgacctctaattgcaaggatgaaatacatatttaagc 186846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8322783 - 8322827
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatattt 45  Q
    ||||||||||||| |||||||||||||||||| || |||||||||    
T  8322783 ccaatttttaaacgacccctaattgcaaggatgaaatacatattt 8322827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13962913 - 13962865
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||||    
T  13962913 ccaatttttaaacgacccctaattgcaaggataaaatatatatttaagc 13962865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16156904 - 16156856
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||    
T  16156904 ccaatttttaaacgacccctaattgcaagtatgaaatacatatttaagc 16156856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18247455 - 18247503
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||| |||||||| |||||||||||||||||| || |||||||||||||    
T  18247455 ccaaattttaaacgacccctaattgcaaggatgaaatacatatttaagc 18247503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18670251 - 18670203
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| |||||||||| || |||||||||||||    
T  18670251 ccaatttttaaacgacccctacttgcaaggatgaaatacatatttaagc 18670203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20840816 - 20840864
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||    
T  20840816 ccaatttttaaacgacccctaattgtaaggatgaaatacatatttaagc 20840864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28269471 - 28269423
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||||||    
T  28269471 ccaatttttaaacgacccctaattgcaatgatgaaatacatatttaagc 28269423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38475378 - 38475426
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||    
T  38475378 ccaatttttaaacgacccctaattgcaaggatgaaatgcatatttaagc 38475426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39453678 - 39453726
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  39453678 ccaatttttaaatgacccctaattgcaaggatgaaatacatatttaagc 39453726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42265784 - 42265736
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  42265784 ccaatttttaaacgacccctaattgcagggatgaaatacatatttaagc 42265736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19892687 - 19892734
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| ||| |||||||||||||| || ||||||||||||    
T  19892687 ccaatttttaaacgacctctaattgcaaggatgaaatacatatttaag 19892734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11047815 - 11047861
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||| |||||||||| || |||||||||||    
T  11047815 ccaatttttaaacgacccctacttgcaaggatgaaatacatatttaa 11047861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13362607 - 13362653
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||||    
T  13362607 ccaatttttaaacgacccctaattgcaatgatgaaatacatatttaa 13362653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21257540 - 21257586
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||    
T  21257540 ccaatttttaaacgacccctaattgcagggatgaaatacatatttaa 21257586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35512197 - 35512151
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||    
T  35512197 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaa 35512151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27937379 - 27937424
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||    
T  27937379 caatttttaaacgacccataattgcaaggatgaaatacatatttaa 27937424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16083322 - 16083370
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | || ||||||||||||| || |||||||||||||    
T  16083322 ccaatttttaaacgatccttaattgcaaggatgaaatacatatttaagc 16083370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17202448 - 17202400
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| |||||| || || ||||||||||    
T  17202448 ccaatttttaaacgacccctaattggaaggatgaaatatatatttaagc 17202400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20814185 - 20814137
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| ||||||| |||||| || |||||||||||||    
T  20814185 ccaatttttaaacgacctctaattgtaaggatgaaatacatatttaagc 20814137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21265521 - 21265569
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| |||||| |||||| || |||||||||||||    
T  21265521 ccaatttttaaacgacccttaattgtaaggatgaaatacatatttaagc 21265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29646411 - 29646363
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||| ||||||| || |||||||||||||    
T  29646411 ccaatttttaaaagacccctaattacaaggataaaatacatatttaagc 29646363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35920563 - 35920611
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||| | ||| || |||||||||||||    
T  35920563 ccaatttttaaacgacccctaattgctatgatgaaatacatatttaagc 35920611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37991248 - 37991200
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || | |||||||||||    
T  37991248 ccaatttttaaacgacccctaattgcagggatgaatttcatatttaagc 37991200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 37992670 - 37992714
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    |||||||||| ||||||||||||| |||| || ||||||||||||    
T  37992670 atttttaaacgacccctaattgcatggatgaaatacatatttaag 37992714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2796476 - 2796524
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2796476 ccaatttttaaacaactcctaattgcaaggatgaagtacatatttaagc 2796524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19741271 - 19741319
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  19741271 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 19741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34142597 - 34142645
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  34142597 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 34142645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51994265 - 51994314
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||||    
T  51994265 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaagct 51994314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2796228 - 2796180
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  2796228 ccaatttttaaatgacccctaattgcaaggatcaaatacatatttaagc 2796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9294337 - 9294385
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  9294337 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 9294385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33689431 - 33689383
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  33689431 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 33689383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40033835 - 40033883
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  40033835 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 40033883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40758196 - 40758148
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  40758196 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 40758148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36150576 - 36150530
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  36150576 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 36150530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3850506 - 3850554
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  3850506 ccaatttttaaacgacccctaattgcagggatgaaatacatatttaagc 3850554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23458358 - 23458406
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  23458358 ccaatttttaaacgacccataattgcaaggatgaaatacatatttaagc 23458406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33689758 - 33689806
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||||||    
T  33689758 ccaatttttaaacgacccctaattgcaaagatgaaatacatatttaagc 33689806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36418067 - 36418115
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||||||    
T  36418067 ccaatttttaaacgacccctaattacaaggatgaaatacatatttaagc 36418115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40758489 - 40758537
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  40758489 ccaatttttaaatgacccctaattgcaaggatgaaatacatatttaagc 40758537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42342840 - 42342792
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||    
T  42342840 ccaatttttaaacgacccctaattgtaaggatgaaatacatatttaagc 42342792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51994013 - 51993965
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  51994013 ccaatttttaaacgacctctaattgcaaagatcaaatacatatttaagc 51993965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55052627 - 55052674
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  55052627 ccaatttttaaa-aacccctaattacaaggatcaaatacatatttaagc 55052674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9292292 - 9292245
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| | |||||||||||||||| || ||||||||||||    
T  9292292 ccaatttttaaacgatccctaattgcaaggatgaaatacatatttaag 9292245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46474864 - 46474818
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||||    
T  46474864 ccaatttttaaacgacccctaattgcaaagatgaaatacatatttaa 46474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 26463680 - 26463635
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||    
T  26463680 caatttttaaacgacccttaattgcaaggatgaaatacatatttaa 26463635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 46475160 - 46475205
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| ||||||||||| |||||| || |||||||||||    
T  46475160 caatttttaaacgacccctaattgtaaggatgaaatacatatttaa 46475205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 53756792 - 53756747
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||||| |||||||||||||| ||| || |||||||||||    
T  53756792 caatttttaaacgacccctaattgcaaagatgaaatacatatttaa 53756747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19740972 - 19740924
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||| | ||||| |||||||||||||    
T  19740972 ccaatttttaaacgatccctaattgcatgaatcaaatacatatttaagc 19740924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26463965 - 26464013
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | | |||||||||||||| || |||||||||||||    
T  26463965 ccaatttttaaacgatctctaattgcaaggatgaaatacatatttaagc 26464013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35712093 - 35712045
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  | |||||||||||||||| || |||||||||||||    
T  35712093 ccaatttttaaatgatccctaattgcaaggatgaaatacatatttaagc 35712045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41558057 - 41558009
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| |||||||||| || || |||||||||||||    
T  41558057 ccaatttttaaacgacccataattgcaagaatgaaatacatatttaagc 41558009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53856064 - 53856016
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| | ||||||| ||||| ||||||| |||||||||||||    
T  53856064 ccaatttttaagcgacccctatttgcagggatcaaatacatatttaagc 53856016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53856436 - 53856484
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| | ||||||| ||||| ||||||| |||||||||||||    
T  53856436 ccaatttttaagcgacccctatttgcagggatcaaatacatatttaagc 53856484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25647933 - 25647885
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  25647933 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 25647885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26024771 - 26024819
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  26024771 ccaatttttaaacgacccctaattgcaaggatcaaatacatatttaagc 26024819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34464828 - 34464876
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  34464828 ccaatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 34464876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 19017677 - 19017630
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  19017677 caatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 19017630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30711375 - 30711328
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  30711375 caatttttaaacaacccctaattgcaaggatgaaatacatatttaagc 30711328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13914446 - 13914495
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  13914446 ccaatttttaaacaacctctaattgcaaggatgaaatacatatttaagct 13914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 183270 - 183222
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  183270 ccaatttttaaacgacccctaattgtaaggatcaaatacatatttaagc 183222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6367611 - 6367563
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  6367611 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 6367563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17661901 - 17661853
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  17661901 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 17661853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19515868 - 19515820
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  19515868 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 19515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23209706 - 23209754
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  23209706 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 23209754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24009624 - 24009576
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  24009624 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 24009576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26024472 - 26024424
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  26024472 ccaatttttaaacgacccctaattgcaagaatcaaatacatatttaagc 26024424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30711706 - 30711754
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  30711706 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 30711754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34464498 - 34464450
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  34464498 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 34464450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34850444 - 34850492
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  34850444 ccaatttttaaacgacccctaattgcaaggattaaatacatatttaagc 34850492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35473680 - 35473632
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  35473680 ccaatttttaaacgacccctaattgcaaggattaaatacatatttaagc 35473632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36694331 - 36694283
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  36694331 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 36694283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36694627 - 36694675
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||||    
T  36694627 ccaatttttaaacaacacctaattgcaaggatgaaatacatatttaagc 36694675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36710432 - 36710384
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  36710432 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 36710384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36710728 - 36710776
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||||    
T  36710728 ccaatttttaaacaacacctaattgcaaggatgaaatacatatttaagc 36710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47999172 - 47999124
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  47999172 ccaatttttaaacgatccctaattgcaaggatcaaatacatatttaagc 47999124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47999471 - 47999519
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  47999471 ccaatttttaaacgacccctaattacaaggatcaaatacatatttaagc 47999519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 35152711 - 35152758
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||    
T  35152711 aatttttaaacgacccctaattgcaaggatgaaatacatatttaagct 35152758  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37578241 - 37578195
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  37578241 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 37578195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40435394 - 40435348
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  40435394 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaa 40435348  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 43759204 - 43759249
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    |||||||||| |||||||||||||||||| || |||||||||||||    
T  43759204 atttttaaacgacccctaattgcaaggatgaaatacatatttaagc 43759249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 4960588 - 4960540
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    |||||||||||| |||||||||||||| ||| || ||||||||||||||    
T  4960588 caatttttaaacgacccctaattgcaatgatgaaatacatatttaagct 4960540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5734059 - 5734011
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||  || |||||||||||||    
T  5734059 ccaatttttaaacgacccctaattgcaaggacgaaatacatatttaagc 5734011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6367941 - 6367989
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  6367941 ccaatttttaaacgacccttaattgcaaggatgaaatacatatttaagc 6367989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17662229 - 17662277
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||||||    
T  17662229 ccaatttttaaacgaccccaaattgcaaggatgaaatacatatttaagc 17662277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34849060 - 34849012
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  34849060 ccaatttttaaaagacccctaattgcaaggattaaatacatatttaagc 34849012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35152392 - 35152344
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||| |||||||||||||| || |||||||||||||    
T  35152392 ccaatttttaaacgacctctaattgcaaggatgaaatacatatttaagc 35152344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37578571 - 37578619
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||||||    
T  37578571 ccaatttttaaacgacccccaattgcaaggatgaaatacatatttaagc 37578619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40772556 - 40772508
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  40772556 ccaatttttaaacgacccataattgcaaggatgaaatacatatttaagc 40772508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41098782 - 41098734
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||    
T  41098782 ccaatttttaaacgacccctaattgcaagaatgaaatacatatttaagc 41098734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 42533071 - 42533027
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    ||||||||||| |||||||||||||||||| || |||||||||||    
T  42533071 aatttttaaacgacccctaattgcaaggatgaaatacatatttaa 42533027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46899110 - 46899062
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||    
T  46899110 ccaatttttaaacgacccctaattgcatggatgaaatacatatttaagc 46899062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51015682 - 51015634
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  51015682 ccaatttttaaacgacccctatttgcagggatcaattacatatttaagc 51015634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51019728 - 51019776
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||    
T  51019728 ccaatttttaaacgacccctatttgcagggatcaattacatatttaagc 51019776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 17692567 - 17692610
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaa 47  Q
    |||||||||| |||||||||||||||||| || |||||||||||    
T  17692567 atttttaaacgacccctaattgcaaggatgaaatacatatttaa 17692610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42248522 - 42248475
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaag 48  Q
    ||||||||||||| ||| |||||||||||||| || ||||||||||||    
T  42248522 ccaatttttaaacgaccactaattgcaaggatgaaatacatatttaag 42248475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6518177 - 6518223
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||||||||||||||||| || || ||||||||||    
T  6518177 aatttttaaacgacccctaattgcaaggatgaaatatatatttaagc 6518223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13914115 - 13914069
Alignment:
Q  3 aatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||| |||||||||||||||||| || |||| ||||||||    
T  13914115 aatttttaaacgacccctaattgcaaggatgaaatacacatttaagc 13914069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49723105 - 49723147
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatat 43  Q
    ||||||||||||| |||||||||||||||||| || |||||||    
T  49723105 ccaatttttaaacgacccctaattgcaaggatgaaatacatat 49723147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 183570 - 183619
Alignment:
Q  1 ccaatttttaaacaacccc-taattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||||||||||    
T  183570 ccaatttttaaacgaccccctaattacaaggatcaaatacatatttaagc 183619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 40772841 - 40772886
Alignment:
Q  4 atttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||| |||| |||||||||||||||||| || |||||||||||||    
T  40772841 attttcaaacgacccctaattgcaaggatgaaatacatatttaagc 40772886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13300283 - 13300331
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||| ||| || |||||||||||||    
T  13300283 ccaatttttaaacgacgcctaattgcaatgatgaaatacatatttaagc 13300331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14879020 - 14878980
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacat 41  Q
    ||||||||||||| |||||||||||||||||| || |||||    
T  14879020 ccaatttttaaacgacccctaattgcaaggataaaatacat 14878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19018008 - 19018056
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||  ||||||||||||| || |||||||||||||    
T  19018008 ccaatttttaaacgacctgtaattgcaaggataaaatacatatttaagc 19018056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 26234430 - 26234489
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagctcacaaaagaataat 64  Q
    |||||||||| | ||||||| ||||| ||||||| |||||||||||||   ||||||||||||    
T  26234430 caatttttaagcgacccctatttgcagggatcaaatacatatttaagc---caaaagaataat 26234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32917639 - 32917687
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||| |||||||||| || || |||||||||||||    
T  32917639 ccaatttttaaacgacccttaattgcaagaatgaaatacatatttaagc 32917687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 48692394 - 48692442
Alignment:
Q  2 caatttttaaacaacccctaattgcaaggatcaagtacatatttaagct 50  Q
    |||||||||||| ||| |||||| ||| |||||| ||||||||||||||    
T  48692394 caatttttaaacgacctctaattacaatgatcaaatacatatttaagct 48692442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6458 - 6506
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  6458 ccaatttttaaacgacccctaattgcaaggatgaaatacatatttaagc 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14769 - 14817
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||    
T  14769 ccaatttttaaacgacccctaattgcaaggatgaaattcatatttaagc 14817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 69014 - 68966
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||  |||||||||||||||||| || |||||||||||||    
T  69014 ccaatttttaaatgacccctaattgcaaggatgaaatacatatttaagc 68966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 69344 - 69392
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| ||  |||||||||||||| || |||||||||||||    
T  69344 ccaatttttaaacgacatctaattgcaaggatgaaatacatatttaagc 69392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37942 - 37990
Alignment:
Q  1 ccaatttttaaacaacccctaattgcaaggatcaagtacatatttaagc 49  Q
    ||||||||||||| || ||||||||||||||| || |||||||||||||    
T  37942 ccaatttttaaacgactcctaattgcaaggatgaaatacatatttaagc 37990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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